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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003555000
- symbol?: rpsB
- synonym:
- description?: 30S ribosomal protein S2
- strand?: +
- coordinates?: 3890980..3891745
- synteny block?: BlockID0026320
- occurrence?: in 100% of 34 strains
rpsB : 30S ribosomal protein S2 [1]
• Two crystal structures are available : 6YEF , 8BH6
Staphylococcal 30S ribosomal protein S2 is also known as "uS2" by the universal ribosomal protein nomenclature harmonization system. [2]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1214 (rpsB)
08BA02176:
C248_1288 (rpsB)
11819-97:
MS7_1214 (rpsB)
6850:
RSAU_001138 (rpsB)
71193:
ST398NM01_1258
ECT-R 2:
ECTR2_1112 (rpsB)
ED133:
SAOV_1258 (rpsB)
ED98:
SAAV_1230 (rpsB)
HO 5096 0412:
SAEMRSA15_10890 (rpsB)
JH1:
SaurJH1_1341 (rpsB)
JH9:
SaurJH9_1316 (rpsB)
JKD6008:
SAA6008_01211 (rpsB)
JKD6159:
SAA6159_01111 (rpsB)
JSNZ:
JSNZ_001227 (rpsB)
LGA251:
SARLGA251_11670 (rpsB)
M013:
M013TW_1196
MRSA252:
SAR1232 (rpsB)
MSHR1132:
SAMSHR1132_10990
MSSA476:
SAS1190 (rpsB)
Mu3:
SAHV_1246 (rpsB)
Mu50:
SAV1256 (rpsB)
MW2:
MW1139 (rpsB)
RF122:
SAB1118 (rpsB)
ST398:
SAPIG1258 (rpsB)
T0131:
SAT0131_01308
TCH60:
HMPREF0772_11974 (rpsB)
TW20:
SATW20_12500 (rpsB)
USA300_TCH1516:
USA300HOU_1188 (rpsB)
VC40:
SAVC_05445 (rpsB)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYNFLKQV
N315 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYNFLKQV
NCTC8325 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYNFLKQV
Newman MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYNFLKQV
USA300_FPR3757 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYNFLKQV
************************************************************
COL SEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLLTNYKTISKRIKRISEIEKM
N315 SEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLLTNYKTISKRIKRISEIEKM
NCTC8325 SEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLLTNYKTISKRIKRISEIEKM
Newman SEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLLTNYKTISKRIKRISEIEKM
USA300_FPR3757 SEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLLTNYKTISKRIKRISEIEKM
************************************************************
COL EEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLN
N315 EEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLN
NCTC8325 EEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLN
Newman EEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLN
USA300_FPR3757 EEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLN
************************************************************
COL IPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNID
N315 IPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNID
NCTC8325 IPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNID
Newman IPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNID
USA300_FPR3757 IPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNID
************************************************************
COL LDEKEKSEETEATEA
N315 LDEKEKSEETEATEE
NCTC8325 LDEKEKSEETEATEE
Newman LDEKEKSEETEATEE
USA300_FPR3757 LDEKEKSEETEATEE
**************
- ↑ Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p) - ↑ Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
A new system for naming ribosomal proteins.
Curr Opin Struct Biol: 2014, 24;165-9
[PubMed:24524803] [WorldCat.org] [DOI] (I p)