PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003524000
• symbol^?: ffh
• synonym:
• description^?: signal recognition particle protein

  descriptions from strain specific annotations:

  • signal recognition particle protein
  • Signal recognition particle, subunit FFH/SRP54
  • Signal recognition particle, subunit Ffh SRP54
  • signal recognition particle-like protein
  • Signal recognition particle subunit Ffh SRP54
• strand^?: +
• coordinates^?: 3863708..3865093
• synteny block^?: BlockID0026030
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1253 (ffh)
N315:
SA1080 (ffh)
NCTC8325:
SAOUHSC_01207
Newman:
NWMN_1147 (ffh)
USA300_FPR3757:
SAUSA300_1130 (ffh)
04-02981:
SA2981_1195 (ffh)
08BA02176:
C248_1268 (ffh)
11819-97:
MS7_1195 (ffh)
6850:
RSAU_001119 (ffh)
71193:
ST398NM01_1237
ECT-R 2:
ECTR2_1093 (ffh)
ED133:
SAOV_1240
ED98:
SAAV_1210 (ffh)
HO 5096 0412:
SAEMRSA15_10700 (ffh)
JH1:
SaurJH1_1321
JH9:
SaurJH9_1296
JKD6008:
SAA6008_01192
JKD6159:
SAA6159_01090
LGA251:
SARLGA251_11480 (ffh)
M013:
M013TW_1175
MRSA252:
SAR1213 (ffh)
MSHR1132:
SAMSHR1132_10780
MSSA476:
SAS1171
Mu3:
SAHV_1227 (ffh)
Mu50:
SAV1237 (ffh)
MW2:
MW1120 (ffh)
RF122:
SAB1101 (ffh)
ST398:
SAPIG1237 (ffh)
T0131:
SAT0131_01287
TCH60:
HMPREF0772_11994 (ffh)
TW20:
SATW20_12310 (ffh)
USA300_TCH1516:
—
VC40:
SAVC_05350

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERA
  N315            MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALFEADVNFKVVKEFIKTVSERA
  NCTC8325        MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERA
  Newman          MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERA
  USA300_FPR3757  MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERA
                  ***************************************:********************
  
  COL             LGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGK
  N315            LGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGK
  NCTC8325        LGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGK
  Newman          LGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGK
  USA300_FPR3757  LGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGK
                  ************************:***********************************
  
  COL             LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA
  N315            LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA
  NCTC8325        LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA
  Newman          LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA
  USA300_FPR3757  LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA
                  ************************************************************
  
  COL             KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQ
  N315            KEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAKPNEIMLVVDSMTGQDAVNVAESFDDQ
  NCTC8325        KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQ
  Newman          KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQ
  USA300_FPR3757  KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQ
                  ******************************:*****************************
  
  COL             LDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGD
  N315            LDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGD
  NCTC8325        LDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGD
  Newman          LDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGD
  USA300_FPR3757  LDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGD
                  ************************************************************
  
  COL             VLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKM
  N315            VLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKM
  NCTC8325        VLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKM
  Newman          VLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKM
  USA300_FPR3757  VLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKM
                  ************************************************************
  
  COL             KGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQF
  N315            KGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQF
  NCTC8325        KGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQF
  Newman          KGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQF
  USA300_FPR3757  KGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQF
                  ************************************************************
  
  COL             NDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
  N315            NDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
  NCTC8325        NDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
  Newman          NDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
  USA300_FPR3757  NDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
                  ***********************************