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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003512000
- symbol?: fapR
- synonym:
- description?: fatty acid biosynthesis transcriptional regulator
- fatty acid biosynthesis transcriptional regulator
- transcription factor
- fatty acid biosynthesis transcriptional regulator, putative
- transcription factor FapR
- fatty acid and phospholipid biosynthesis transcriptional regulator
- PaaI family protein
- transcription factor FapR (Fatty acid and phospholipid biosynthesisregulator)
- transcription regulator FapR
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3852929..3853501
- synteny block?: BlockID0025910
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1186 (fapR)
08BA02176:
C248_1258
11819-97:
MS7_1186 (fapR)
6850:
RSAU_001110
71193:
ST398NM01_1227
ECT-R 2:
ECTR2_1084
ED133:
SAOV_1231
ED98:
SAAV_1200
HO 5096 0412:
SAEMRSA15_10610
JH1:
SaurJH1_1312
JH9:
SaurJH9_1287
JKD6008:
SAA6008_01183 (fapR)
JKD6159:
SAA6159_01081 (fapR)
LGA251:
SARLGA251_11390 (fapR)
M013:
M013TW_1166
MRSA252:
SAR1204
MSHR1132:
SAMSHR1132_10690
MSSA476:
SAS1162
Mu3:
SAHV_1218
Mu50:
SAV1228
MW2:
MW1111
RF122:
SAB1092
ST398:
SAPIG1227
T0131:
SAT0131_01277 (ureB)
TCH60:
HMPREF0772_12004
TW20:
SATW20_12220 (fapR)
USA300_TCH1516:
USA300HOU_1164
VC40:
SAVC_05305
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIK
N315 -----MKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIK
NCTC8325 MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIK
Newman MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIK
USA300_FPR3757 MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIK
:******************************************************
COL LVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANS
N315 LVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANS
NCTC8325 LVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANS
Newman LVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANS
USA300_FPR3757 LVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANS
************************************************************
COL LCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKG
N315 LCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKG
NCTC8325 LCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKG
Newman LCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKG
USA300_FPR3757 LCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKG
************************************************************
COL NFKMFYDKRG
N315 NFKMFYDKRG
NCTC8325 NFKMFYDKRG
Newman NFKMFYDKRG
USA300_FPR3757 NFKMFYDKRG
**********