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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003484000
- symbol?: pyrF
- synonym:
- description?: orotidine 5'-phosphate decarboxylase
- orotidine 5'-phosphate decarboxylase
- orotidine 5'-phosphate decarboxylase (OMP decarboxylase)(OMPDCase) (OMPdecase)
- putative orotidine 5'-phosphate decarboxylase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3826133..3826828
- synteny block?: BlockID0025630
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1162 (pyrF)
08BA02176:
C248_1233 (pyrF)
11819-97:
MS7_1161 (pyrF)
6850:
RSAU_001087 (pyrF)
71193:
ST398NM01_1201
ECT-R 2:
ECTR2_1059 (pyrF)
ED133:
SAOV_1207
ED98:
SAAV_1175 (pyrF)
HO 5096 0412:
SAEMRSA15_10370 (pyrF)
JH1:
SaurJH1_1288
JH9:
SaurJH9_1263
JKD6008:
SAA6008_01158 (pyrF)
JKD6159:
SAA6159_01057 (pyrF)
LGA251:
SARLGA251_11150 (pyrF)
M013:
M013TW_1139
MRSA252:
SAR1180 (pyrF)
MSHR1132:
SAMSHR1132_10450
MSSA476:
SAS1138
Mu3:
SAHV_1194 (pyrF)
Mu50:
SAV1204 (pyrF)
MW2:
MW1087 (pyrF)
RF122:
SAB1068 (pyrF)
ST398:
SAPIG1201 (pyrF)
T0131:
SAT0131_01252
TCH60:
HMPREF0772_12028 (pyrF)
TW20:
SATW20_11980 (pyrF)
USA300_TCH1516:
USA300HOU_1142 (pyrF)
VC40:
SAVC_05185
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKDLPIIALDFESKEKVNQFLDLFDESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLK
N315 MKDLPIIALDFESKEKVNQFLDLFDESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLK
NCTC8325 MKDLPIIALDFESKEKVNQFLDLFDESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLK
Newman MKDLPIIALDFESKEKVNQFLDLFDESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLK
USA300_FPR3757 MKDLPIIALDFESKEKVNQFLDLFDESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLK
************************************************************
COL LHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQDTKIIAVTQLTSTT
N315 LHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQHTKIIAVTQLTSTT
NCTC8325 LHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQDTKIIAVTQLTSTT
Newman LHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQDTKIIAVTQLTSTT
USA300_FPR3757 LHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQDTKIIAVTQLTSTT
**********************************************.*************
COL EDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRP
N315 EDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRP
NCTC8325 EDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRP
Newman EDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRP
USA300_FPR3757 EDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRP
************************************************************
COL KGASQNDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
N315 KGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
NCTC8325 KGASQNDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
Newman KGASQNDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
USA300_FPR3757 KGASQNDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
*****:********************************************