PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003318000
• symbol^?: pdhB
• synonym:
• description^?: pyruvate dehydrogenase E1 component subunit beta

  descriptions from strain specific annotations:

  • pyruvate dehydrogenase E1 component subunit beta
  • pyruvate dehydrogenase E1 component, beta subunit
  • alpha-ketoacid dehydrogenase subunit beta
  • pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit PdhB
  • pyruvate dehydrogenase complex, E1 component subunit beta
  • pyruvate dehydrogenase complex E1 component subunit beta
  • pyruvate dehydrogenase E1 component beta subunit
  • putative pyruvate dehydrogenase E1 component,beta subunit
  • putative pyruvate dehydrogenase E1 component subunit beta
  • pyruvate dehydrogenase (acetyl-transferring) beta subunit
  • pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit
  • pyruvate dehydrogenase complex E1 component, beta subunit
  • pyruvate dehydrogenase complex E1 component beta subunit
  • pyruvate dehydrogenase E1 component subunit beta (Scomplex, 36 kDa subunit)
  • transketolase domain-containing protein
• strand^?: +
• coordinates^?: 3685579..3686556
• synteny block^?: BlockID0024020
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1103 (pdhB)
N315:
SA0944 (pdhB)
NCTC8325:
SAOUHSC_01041
Newman:
NWMN_0960 (phdB)
USA300_FPR3757:
SAUSA300_0994 (pdhB)
04-02981:
SA2981_1051 (pdhB)
08BA02176:
C248_1121 (pdhB)
11819-97:
MS7_1051 (pdhB)
6850:
RSAU_000979 (pdhB)
71193:
ST398NM01_1091
ECT-R 2:
ECTR2_949
ED133:
SAOV_1038
ED98:
SAAV_1059 (pdhB)
HO 5096 0412:
SAEMRSA15_09240 (pdhB)
JH1:
SaurJH1_1176
JH9:
SaurJH9_1154
JKD6008:
SAA6008_01049 (pdhB)
JKD6159:
SAA6159_00950 (pdhB)
LGA251:
SARLGA251_10070 (pdhB)
M013:
M013TW_1026
MRSA252:
SAR1068 (pdhB)
MSHR1132:
SAMSHR1132_09410
MSSA476:
SAS1029
Mu3:
SAHV_1086 (phdB)
Mu50:
SAV1094 (phdB)
MW2:
MW0977 (phdB)
RF122:
SAB0960 (pdhB)
ST398:
SAPIG1091
T0131:
SAT0131_01131
TCH60:
HMPREF0772_12138 (pdhB)
TW20:
SATW20_10890 (pdhB)
USA300_TCH1516:
USA300HOU_1037 (phdB)
VC40:
SAVC_04630

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAQMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAE
  N315            MAQMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAE
  NCTC8325        MAQMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAE
  Newman          MAQMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAE
  USA300_FPR3757  MAQMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAE
                  ************************************************************
  
  COL             SGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRGPFG
  N315            SGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFG
  NCTC8325        SGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFG
  Newman          SGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFG
  USA300_FPR3757  SGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFG
                  ********************************************************.***
  
  COL             GGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSF
  N315            GGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSF
  NCTC8325        GGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSF
  Newman          GGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSF
  USA300_FPR3757  GGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSF
                  ************************************************************
  
  COL             REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQ
  N315            REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQ
  NCTC8325        REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQ
  Newman          REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQ
  USA300_FPR3757  REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQ
                  ************************************************************
  
  COL             PIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYP
  N315            PIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYP
  NCTC8325        PIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYP
  Newman          PIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYP
  USA300_FPR3757  PIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYP
                  ************************************************************
  
  COL             FTQAENVWLPNKNDIIEKAKETLEF
  N315            FTQAENVWLPNKNDIIEKAKETLEF
  NCTC8325        FTQAENVWLPNKNDIIEKAKETLEF
  Newman          FTQAENVWLPNKNDIIEKAKETLEF
  USA300_FPR3757  FTQAENVWLPNKNDIIEKAKETLEF
                  *************************