PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003315000
• symbol^?: def
• synonym:
• description^?: peptide deformylase

  descriptions from strain specific annotations:

  • peptide deformylase
  • putative polypeptide deformylase 2
• strand^?: -
• coordinates^?: 3682725..3683276
• synteny block^?: BlockID0023990
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1100 (def)
N315:
SA0942 (def)
NCTC8325:
SAOUHSC_01038 (def)
Newman:
NWMN_0957 (def)
USA300_FPR3757:
SAUSA300_0991 (def)
04-02981:
SA2981_1048 (pdf1)
08BA02176:
C248_1118
11819-97:
MS7_1048
6850:
RSAU_000976 (def1)
71193:
ST398NM01_1088
ECT-R 2:
ECTR2_946 (def)
ED133:
SAOV_1035c
ED98:
SAAV_1056 (def)
HO 5096 0412:
SAEMRSA15_09210
JH1:
SaurJH1_1173 (def)
JH9:
SaurJH9_1151 (def)
JKD6008:
SAA6008_01046 (def)
JKD6159:
SAA6159_00947 (def)
LGA251:
SARLGA251_10040
M013:
M013TW_1023
MRSA252:
SAR1065 (def)
MSHR1132:
SAMSHR1132_09380
MSSA476:
SAS1026 (def)
Mu3:
SAHV_1083 (def)
Mu50:
SAV1091 (def)
MW2:
MW0974 (def)
RF122:
SAB0957c (def)
ST398:
SAPIG1088 (def)
T0131:
SAT0131_01128
TCH60:
HMPREF0772_12141 (def2)
TW20:
SATW20_10860
USA300_TCH1516:
USA300HOU_1034 (def)
VC40:
SAVC_04615 (def)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVG
  N315            MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVG
  NCTC8325        MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVG
  Newman          MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVG
  USA300_FPR3757  MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVG
                  ************************************************************
  
  COL             LAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAG
  N315            LAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAG
  NCTC8325        LAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAG
  Newman          LAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAG
  USA300_FPR3757  LAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAG
                  ************************************************************
  
  COL             LVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKDHPLQPHTDA
  N315            LVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDA
  NCTC8325        LVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKDHPLQPHTDA
  Newman          LVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKDHPLQPHTDA
  USA300_FPR3757  LVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKDHPLQPHTDA
                  **************************************************:*********
  
  COL             VEV
  N315            VEV
  NCTC8325        VEV
  Newman          VEV
  USA300_FPR3757  VEV
                  ***