Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN003307000
- symbol?: cydB
- synonym:
- description?: cytochrome d ubiquinol oxidase subunit II
- cytochrome d ubiquinol oxidase subunit II
- cytochrome D ubiquinol oxidase, subunit II
- cytochrome d ubiquinol oxidase, subunit II, putative
- cytochrome bd-type quinol oxidase subunit 2-like protein
- cytochrome D ubiquinol oxidase subunit II-like protein
- cytochrome oxidase subunit II family protein
- putative cytochrome D ubiquinol oxidase, subunit II
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3677980..3678999
- synteny block?: BlockID0023910
- occurrence?: in 100% of 34 strains
cydB (cbdB) : cytochrome bd ubiquinol oxidase subunit II [1]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1043
08BA02176:
C248_1113
11819-97:
MS7_1044
6850:
RSAU_000972 (cydB)
71193:
ST398NM01_1084
ECT-R 2:
ECTR2_942
ED133:
SAOV_1031
ED98:
SAAV_1052 (cydB)
HO 5096 0412:
SAEMRSA15_09170
JH1:
SaurJH1_1169
JH9:
SaurJH9_1147
JKD6008:
SAA6008_01042 (cydB)
JKD6159:
SAA6159_00943 (cydB)
LGA251:
SARLGA251_10000
M013:
M013TW_1019
MRSA252:
SAR1060
MSHR1132:
SAMSHR1132_09340
MSSA476:
SAS1022
Mu3:
SAHV_1079
Mu50:
SAV1087
MW2:
MW0969
RF122:
SAB0953
ST398:
SAPIG1084
T0131:
SAT0131_01123
TCH60:
HMPREF0772_12146 (cydB)
TW20:
SATW20_10820
USA300_TCH1516:
USA300HOU_1029 (cydB)
VC40:
SAVC_04595
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTN
N315 MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTN
NCTC8325 MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTN
Newman MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTN
USA300_FPR3757 MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTN
************************************************************
COL VFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMY
N315 VFFVFFFVGFVGFFPESIKYLGTVLLVPGSIALIMISLRNSFYAFENYGQDTKLAWMIMY
NCTC8325 VFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMY
Newman VFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMY
USA300_FPR3757 VFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMY
**************************:*********************************
COL GVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSG
N315 GVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSG
NCTC8325 GVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSG
Newman GVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSG
USA300_FPR3757 GVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSG
************************************************************
COL FLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFG
N315 FLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFA
NCTC8325 FLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFG
Newman FLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFG
USA300_FPR3757 FLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFG
***********************************************************.
COL ISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPE
N315 ISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPE
NCTC8325 ISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPE
Newman ISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPE
USA300_FPR3757 ISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPE
************************************************************
COL MGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
N315 MGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
NCTC8325 MGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
Newman MGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
USA300_FPR3757 MGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
***************************************
- ↑ Neal D Hammer, Michelle L Reniere, James E Cassat, Yaofang Zhang, Amanda O Hirsch, M Indriati Hood, Eric P Skaar
Two heme-dependent terminal oxidases power Staphylococcus aureus organ-specific colonization of the vertebrate host.
mBio: 2013, 4(4);
[PubMed:23900169] [WorldCat.org] [DOI] (I e)Neal D Hammer, Lici A Schurig-Briccio, Svetlana Y Gerdes, Robert B Gennis, Eric P Skaar
CtaM Is Required for Menaquinol Oxidase aa3 Function in Staphylococcus aureus.
mBio: 2016, 7(4);
[PubMed:27406563] [WorldCat.org] [DOI] (I e)Yujin Suzuki, Miki Kawada-Matsuo, Mi Nguyen-Tra Le, Sopongselamuny Eng, Junzo Hisatsune, Motoyuki Sugai, Takemasa Sakaguchi, Hitoshi Komatsuzawa
The two-component regulatory systems GraRS and SrrAB mediate Staphylococcus aureus susceptibility to Pep5 produced by clinical isolate of Staphylococcus epidermidis.
Appl Environ Microbiol: 2024, 90(7);e0030024
[PubMed:38832774] [WorldCat.org] [DOI] (I p)