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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003209000
- symbol?: trnaN
- synonym:
- description?: tRNA-Asn
- tRNA-Asn
- tRNA-OTHER
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3598795..3598869
- synteny block?: BlockID0022960
- occurrence?: in 97% of 34 strains
trnaN : tRNA-AsnGUU
Modifications: [1]
• guanidine(34) → queuosine(34)
• adenosine(37) → N(6)-threonylcarbamoyladenosine(37)
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to three asparaginyl-tRNA sequences, all of which share the same GUU anticodon. This tRNA-AsnGUU1 is from Locus III; other tRNA-Asn can be found elsewhere in Locus IV (tRNA-AsnGUU2), and in Locus VII (tRNA-AsnGUU3). Please note that some additional modifications, such as pseudouridines (Ψ) are almost certainly present but not captured in the above cited reference.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA17
08BA02176:
C248_1049 (trnaN)
11819-97:
MS7_0982
6850:
RSAU_000911
71193:
ST398NM01_r051
ECT-R 2:
ECTR2_881
ED133:
SAOV_0970c
ED98:
SAAV_0989
HO 5096 0412:
SAEMRSA15_tRNA0015
JH1:
SaurJH1_R0027
JH9:
SaurJH9_R0026
JKD6008:
SAA6008_t15
JKD6159:
SAA6159_t14
LGA251:
SARLGA251_t33
M013:
M013TW_0953
MRSA252:
SARt015
MSHR1132:
SAMSHR1132_t07
MSSA476:
SASt015
Mu3:
SAHV_t0015
Mu50:
SAVtRNA15
MW2:
MWtRNA15
RF122:
—
ST398:
SAPIG1022
T0131:
SAT0131_t052
TCH60:
HMPREF0772_t10057
TW20:
SATW20_t150
USA300_TCH1516:
USA300HOU_t0015
VC40:
SAVC_t12493
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)