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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003179000
- symbol?: —
- synonym:
- description?: RNA pseudouridine synthase
- RNA pseudouridine synthase
- RluA family pseudouridine synthase
- pseudouridine synthase, RluA subfamily
- ribosomal large subunit pseudouridine synthase D
- RNA pseudouridylate synthase
- Pseudouridine synthase
- putative RNA pseudouridylate synthase
- ribosomal large subunit pseudouridine synthase, RluD subfamily
- ribosomal large subunitpseudouridine synthase D-like protein
- RluD subfamily ribosomal large subunit pseudouridine synthase
- RNA pseudoridylate synthase
- RNA pseudouridylate synthase family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3569357..3570212
- synteny block?: BlockID0022660
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0962 (yjbO)
08BA02176:
C248_1030
11819-97:
MS7_0963
6850:
RSAU_000886
71193:
ST398NM01_1003
ECT-R 2:
ECTR2_862
ED133:
SAOV_0953
ED98:
SAAV_0970
HO 5096 0412:
SAEMRSA15_08380
JH1:
SaurJH1_1025
JH9:
SaurJH9_1006
JKD6008:
SAA6008_00961 (rluA1)
JKD6159:
SAA6159_00864 (rluA1)
LGA251:
SARLGA251_09230
M013:
M013TW_0930
MRSA252:
SAR0975
MSHR1132:
SAMSHR1132_08550
MSSA476:
SAS0877
Mu3:
SAHV_1002
Mu50:
SAV1008
MW2:
MW0889
RF122:
SAB0874
ST398:
SAPIG1003
T0131:
SAT0131_01043
TCH60:
HMPREF0772_12229
TW20:
SATW20_10050
USA300_TCH1516:
USA300HOU_0965 (rluA1)
VC40:
SAVC_04205
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKFKYHISQQETVKTFLARHDFSKKTVSAIKNNGALIVNDEPVTVRKQLMTNDILEIHLP
N315 MKFKYHISQQETVKAFLARHDFSKKTVSAIKNNGALIVNDEPVTVRKQLMPNDILEIHLP
NCTC8325 MKFKYHISQQETVKTFLARHDFSKKTVSAIKNNGALIVNDEPVTVRKQLMTNDILEIHLP
Newman MKFKYHISQQETVKTFLARHDFSKKTVSAIKNNGALIVNDEPVTVRKQLMTNDILEIHLP
USA300_FPR3757 MKFKYHISQQETVKTFLARHDFSKKTVSAIKNNGALIVNDEPVTVRKQLMTNDILEIHLP
**************:***********************************.*********
COL REIPSVNLIPYARKLEVLYEDAFIIIVTKPNNQNCTPSREHPHESLIEQVLYHCQEHGEN
N315 REIPSVNLIPYARKLEVLYEDAFIIIVTKPNNQNCTPSREHPHESLIEQVLYHCQEHGEN
NCTC8325 REIPSVNLIPYARKLEVLYEDAFIIIVTKPNNQNCTPSREHPHESLIEQVLYHCQEHGEN
Newman REIPSVNLIPYARKLEVLYEDAFIIIVTKPNNQNCTPSREHPHESLIEQVLYHCQEHGEN
USA300_FPR3757 REIPSVNLIPYARKLEVLYEDAFIIIVTKPNNQNCTPSREHPHESLIEQVLYHCQEHGEN
************************************************************
COL INPHIVTRLDRNTTGIVIFAKYGHIHHLFSKVNLKKIYTCLVYGKTHTSGIIEANIRRSK
N315 INPHIVTRLDRNTTGIVIFAKYGHIHHLFSKVNLKKIYTCLVYGKTHTSGIIEANIRRSK
NCTC8325 INPHIVTRLDRNTTGIVIFAKYGHIHHLFSKVNLKKIYTCLVYGKTHTSGIIEANIRRSK
Newman INPHIVTRLDRNTTGIVIFAKYGHIHHLFSKVNLKKIYTCLVYGKTHTSGIIEANIRRSK
USA300_FPR3757 INPHIVTRLDRNTTGIVIFAKYGHIHHLFSKVNLKKIYTCLVYGKTHTSGIIEANIRRSK
************************************************************
COL DRIITREVASDGKYAKTSYEVINQNDKYSLCKVHLHTGRTHQIRVHFQHIGHPIVGDSLY
N315 DSIITREVASDGKYAKTSYEVINQNDKYSLCKVHLHTGRTHQIRVHFQHIGHPIVGDSLY
NCTC8325 DRIITREVASDGKYAKTSYEVINQNDKYSLCKVHLHTGRTHQIRVHFQHIGHPIVGDSLY
Newman DRIITREVASDGKYAKTSYEVINQNDKYSLCKVHLHTGRTHQIRVHFQHIGHPIVGDSLY
USA300_FPR3757 DRIITREVASDGKYAKTSYEVINQNDKYSLCKVHLHTGRTHQIRVHFQHIGHPIVGDSLY
* **********************************************************
COL DGFHDKIHGQVLQCTQIYFVHPINKNNIYITIDYKQLLKLFNQL
N315 DGFHDKIHGQVLQCTQIYFVHPINKNNIYITIDYKQLLKLFNQL
NCTC8325 DGFHDKIHGQVLQCTQIYFVHPINKNNIYITIDYKQLLKLFNQL
Newman DGFHDKIHGQVLQCTQIYFVHPINKNNIYITIDYKQLLKLFNQL
USA300_FPR3757 DGFHDKIHGQVLQCTQIYFVHPINKNNIYITIDYKQLLKLFNQL
********************************************