PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003151000
• symbol^?: opp4F
• synonym:
• description^?: oligopeptide ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • oligopeptide ABC transporter ATP-binding protein
  • ABC transporter ATP-binding protein
  • dipeptide ABC transporter ATP-binding protein
  • oligopeptide ABC transporter, ATP-binding protein OppD, putative
  • peptide ABC transporter substrate-binding protein
  • Oligopeptide transport ATP-binding protein oppF
  • putative oligopeptide transport ATP-binding protein
  • oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein
  • oligopeptide/dipeptide ABC transporter ATPase
  • oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
  • oligopeptide ABC transporter, ATP-binding protein
  • oligopeptide transport ATP-binding protein appF
  • oligopeptide transport system ATP-binding protein AppF homologue
  • oligopeptide transport system ATP-binding protein AppF-like protein
• strand^?: +
• coordinates^?: 3535620..3536684
• synteny block^?: BlockID0022400
• occurrence^?: in 85% of 33 strains

⊟Orthologs

COL:
SACOL0998
N315:
SA0852 (appF)
NCTC8325:
SAOUHSC_00930
Newman:
NWMN_0863
USA300_FPR3757:
SAUSA300_0894 (oppD)
04-02981:
SA2981_0948 (oppF)
08BA02176:
—
11819-97:
MS7_0949
6850:
RSAU_000867 (oppD2)
71193:
—
ECT-R 2:
ECTR2_848
ED133:
SAOV_0939
ED98:
SAAV_0954
HO 5096 0412:
SAEMRSA15_08220 (appF)
JH1:
SaurJH1_1011
JH9:
SaurJH9_0992
JKD6008:
SAA6008_00946
JKD6159:
—
LGA251:
SARLGA251_09090 (appF)
M013:
M013TW_0915
MRSA252:
SAR0958 (appF)
MSHR1132:
SAMSHR1132_08410
MSSA476:
SAS0863
Mu3:
SAHV_0988 (appF)
Mu50:
SAV0993 (appF)
MW2:
MW0875 (appF)
RF122:
—
ST398:
—
T0131:
SAT0131_01026
TCH60:
HMPREF0772_12248 (oppF2)
TW20:
SATW20_09910 (appF)
USA300_TCH1516:
USA300HOU_0951 (oppD3)
VC40:
SAVC_04135

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MENILEVNQIKKYYKIKTGLLQKTQYVKAVDDVSFSIKKGQTFGLVGESGCGKSTLGKVI
  N315            MENILEVNQIKKYYKIKTGLLQKTQYVKAVDDVSFSIKKGQTFGLVGESGCGKSTLGKVI
  NCTC8325        MENILEVNQIKKYYKIKTGLLQKTQYVKAVDDVSFSIKKGQTFGLVGESGCGKSTLGKVI
  Newman          MENILEVNQIKKYYKIKTGLLQKTQYVKAVDDVSFSIKKGQTFGLVGESGCGKSTLGKVI
  USA300_FPR3757  MENILEVNQIKKYYKIKTGLLQKTQYVKAVDDVSFSIKKGQTFGLVGESGCGKSTLGKVI
                  ************************************************************
  
  COL             IRLEDATSGSIIVNGEDITRLQGKKLRKSRQQYQMIFQDPYASLNPMQMVGDIISEPILN
  N315            IRLEDATSGSIIVNGEDITRLQGKKLRKSRQQYQMIFQDPYASLNPMQMVGDIISEPILN
  NCTC8325        IRLEDATSGSIIVNGEDITRLQGKKLRKSRQQYQMIFQDPYASLNPMQMVGDIISEPILN
  Newman          IRLEDATSGSIIVNGEDITRLQGKKLRKSRQQYQMIFQDPYASLNPMQMVGDIISEPILN
  USA300_FPR3757  IRLEDATSGSIIVNGEDITRLQGKKLRKSRQQYQMIFQDPYASLNPMQMVGDIISEPILN
                  ************************************************************
  
  COL             YKKLPKEEIKKEVLYLLKCVGLSEDAYYKYAHEFSGGQRQRVGIARALALRPSLIVADEP
  N315            YKKLPKEEIKKEVLYLLKCVGLSEDAYYKYAHEFSGGQRQRVGIARALALRPSLIVADEP
  NCTC8325        YKKLPKEEIKKEVLYLLKCVGLSEDAYYKYAHEFSGGQRQRVGIARALALRPSLIVADEP
  Newman          YKKLPKEEIKKEVLYLLKCVGLSEDAYYKYAHEFSGGQRQRVGIARALALRPSLIVADEP
  USA300_FPR3757  YKKLPKEEIKKEVLYLLKCVGLSEDAYYKYAHEFSGGQRQRVGIARALALRPSLIVADEP
                  ************************************************************
  
  COL             VSALDVSVQSQVLNLLKDLQEQFNLSYLFIAHDLSVVKHISDVIGVMYLGHIVEIASDKE
  N315            VSALDVSVQSQVLNLLKDLQEQFKLSYLFIAHDLSVVKHISDVIGVMYLGHIVEIASDKE
  NCTC8325        VSALDVSVQSQVLNLLKDLQEQFNLSYLFIAHDLSVVKHISDVIGVMYLGHIVEIASDKE
  Newman          VSALDVSVQSQVLNLLKDLQEQFNLSYLFIAHDLSVVKHISDVIGVMYLGHIVEIASDKE
  USA300_FPR3757  VSALDVSVQSQVLNLLKDLQEQFNLSYLFIAHDLSVVKHISDVIGVMYLGHIVEIASDKE
                  ***********************:************************************
  
  COL             IYENPKHPYTKALISSIPQIDKHNNNRIILKGELPSPSNPPQGCPFHTRCPIAQDMCKKS
  N315            IYENPKHPYTKALISSIPQIDKHNNNRIILKGELPSPSNPPQGCPFHTRCPIAKDKCKEN
  NCTC8325        IYENPKHPYTKALISSIPQIDKHNNNRIILKGELPSPSNPPQGCPFHTRCPIAQDMCKKS
  Newman          IYENPKHPYTKALISSIPQIDKHNNNRIILKGELPSPSNPPQGCPFHTRCPIAQDMCKKS
  USA300_FPR3757  IYENPKHPYTKALISSIPQIDKHNNNRIILKGELPSPSNPPQGCPFHTRCPIAQDMCKKS
                  *****************************************************:* **:.
  
  COL             MPELKDIGNEHQVACFYVDKVGDLND
  N315            IPQLKDIGNEHQVACFYVDKVGDLNA
  NCTC8325        MPELKDIGNEHQVACFYVDKVGDLND
  Newman          MPELKDIGNEHQVACFYVDKVGDLND
  USA300_FPR3757  MPELKDIGNEHQVACFYVDKVGDLND
                  :*:**********************