PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003149000
• symbol^?: opp4D
• synonym:
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • oligopeptide ABC transporter ATP-binding protein
  • peptide ABC transporter ATP-binding protein
  • oligopeptide ABC transporter ATP-binding protein oppF, putative
  • Oligopeptide transport ATP-binding protein OppD
  • putative oligopeptide transport ATP-binding protein
  • oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein
  • oligopeptide/dipeptide ABC transporter ATPase
  • oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
  • oligopeptide ABC transporter, ATP-binding protein
  • Oligopeptide ABC transporter, ATP-binding protein, putative
  • oligopeptide transport ATP-binding protein
  • putative peptide ABC transporter ATP-binding protein y4tR
• strand^?: +
• coordinates^?: 3534388..3535617
• synteny block^?: BlockID0022380
• occurrence^?: in 85% of 33 strains

⊟Orthologs

COL:
SACOL0997
N315:
SA0851
NCTC8325:
SAOUHSC_00929
Newman:
NWMN_0862 (appF)
USA300_FPR3757:
SAUSA300_0893 (oppF)
04-02981:
SA2981_0947 (oppD)
08BA02176:
—
11819-97:
MS7_0948
6850:
RSAU_000866 (oppF2)
71193:
—
ECT-R 2:
ECTR2_847
ED133:
SAOV_0938
ED98:
SAAV_0953
HO 5096 0412:
SAEMRSA15_08210 (appD)
JH1:
SaurJH1_1010
JH9:
SaurJH9_0991
JKD6008:
SAA6008_00945
JKD6159:
—
LGA251:
SARLGA251_09080 (appD)
M013:
M013TW_0914
MRSA252:
SAR0957 (appD)
MSHR1132:
SAMSHR1132_08400
MSSA476:
SAS0862
Mu3:
SAHV_0987
Mu50:
SAV0992
MW2:
MW0874
RF122:
—
ST398:
—
T0131:
SAT0131_01025
TCH60:
HMPREF0772_12250 (dppD)
TW20:
SATW20_09900 (appD)
USA300_TCH1516:
USA300HOU_0950 (oppD2)
VC40:
SAVC_04130

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLP
  N315            MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLP
  NCTC8325        MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLP
  Newman          MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLP
  USA300_FPR3757  MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLP
                  ************************************************************
  
  COL             EKISKLSNGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIK
  N315            EKISKLSSGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIK
  NCTC8325        EKISKLSNGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIK
  Newman          EKISKLSNGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIK
  USA300_FPR3757  EKISKLSNGEVIFDGKRIDTLNEKQLPDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIK
                  *******.****************** *********************************
  
  COL             SHKKISKKEANKLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA
  N315            SHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA
  NCTC8325        SHKKISKKEANKLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA
  Newman          SHKKISKKEANKLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA
  USA300_FPR3757  SHKKISKKEANKLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA
                  ***********:************************************************
  
  COL             DEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
  N315            DEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
  NCTC8325        DEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
  Newman          DEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
  USA300_FPR3757  DEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
                  ************************************************************
  
  COL             IKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHVNKCRFANRCNKKLDI
  N315            IKEILHNPKHPYTQKLLSTIPKLKEGQKRLETIEGIVPSIQAFHVNKCRFANRCNKKLDI
  NCTC8325        IKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHVNKCRFANRCNKKLDI
  Newman          IKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHVNKCRFANRCNKKLDI
  USA300_FPR3757  IKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHVNKCRFANRCNKKLDI
                  ************************* **********************************
  
  COL             CNNQSPKMHVCEDVIVRCHLYKNEYKEI
  N315            CNNQSPKMHVCEDVIVRCHLYKNEYKEI
  NCTC8325        CNNQSPKMHVCEDVIVRCHLYKNEYKEI
  Newman          CNNQSPKMHVCEDVIVRCHLYKNEYKEI
  USA300_FPR3757  CNNQSPKMHVCEDVIVRCHLYKNEYKEI
                  ****************************