PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003135000
• symbol^?: opp3D
• synonym:
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • oligopeptide ABC transporter ATP-binding protein
  • oligopeptide transport ATP-binding protein
  • oligopeptide transport system ATP-binding protein oppD, putative
  • Oligopeptide transport ATP-binding protein oppD
  • putative oligopeptide transport ATP-binding protein
  • Oligopeptide/dipeptide ABC transporter, ATPase subunit
  • oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein
  • oligopeptide/dipeptide ABC transporter ATPase
  • oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
  • oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein, Opp3D
  • oligopeptide ABC transporter, ATP-binding protein
  • oligopeptide transport system ATP-binding protein OppD homologue
  • oligopeptide transport system ATP-binding protein OppD-like protein
  • Peptide/nickel transport system ATP-binding protein
  • peptide ABC transporter ATP-binding protein
• strand^?: +
• coordinates^?: 3518562..3519644
• synteny block^?: BlockID0022270
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0993 (oppD)
N315:
SA0847 (oppD)
NCTC8325:
SAOUHSC_00925
Newman:
NWMN_0858 (oppD)
USA300_FPR3757:
SAUSA300_0889 (oppD)
04-02981:
SA2981_0943 (oppD)
08BA02176:
C248_1011 (oppD)
11819-97:
MS7_0943
6850:
RSAU_000862 (oppD1)
71193:
ST398NM01_0984
ECT-R 2:
ECTR2_843
ED133:
SAOV_0934
ED98:
SAAV_0949 (oppD)
HO 5096 0412:
SAEMRSA15_08170 (oppD)
JH1:
SaurJH1_1006
JH9:
SaurJH9_0987
JKD6008:
SAA6008_00941 (oppD)
JKD6159:
SAA6159_00845 (opp3D)
LGA251:
SARLGA251_09040 (oppD)
M013:
M013TW_0910
MRSA252:
SAR0951 (oppD)
MSHR1132:
SAMSHR1132_08360
MSSA476:
SAS0858
Mu3:
SAHV_0983 (oppD)
Mu50:
SAV0988 (oppD)
MW2:
MW0870 (oppD)
RF122:
SAB0854 (oppD)
ST398:
SAPIG0984
T0131:
SAT0131_01021 (upp)
TCH60:
HMPREF0772_12257 (oppD2)
TW20:
SATW20_09860 (oppD)
USA300_TCH1516:
USA300HOU_0946 (oppD1)
VC40:
SAVC_04110

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTERILEVNDLHVSFDITAGEVQAVRGVDFYLNKGETLAIVGESGSGKSVTTKAITKLFQ
  N315            MTERILEVNDLHVSFDITAGEVQAVRGVDFYLNKGETLAIVGESGSGKSVTTKAITKLFQ
  NCTC8325        MTERILEVNDLHVSFDITAGEVQAVRGVDFYLNKGETLAIVGESGSGKSVTTKAITKLFQ
  Newman          MTERILEVNDLHVSFDITAGEVQAVRGVDFYLNKGETLAIVGESGSGKSVTTKAITKLFQ
  USA300_FPR3757  MTERILEVNDLHVSFDITAGEVQAVRGVDFYLNKGETLAIVGESGSGKSVTTKAITKLFQ
                  ************************************************************
  
  COL             GDTGRIKKGEILFLGEDLAKKPENELIKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLI
  N315            GDTGRIKKGEILFLGEDLAKKPENELIKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLI
  NCTC8325        GDTGRIKKGEILFLGEDLAKKPENELIKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLI
  Newman          GDTGRIKKGEILFLGEDLAKKPENELIKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLI
  USA300_FPR3757  GDTGRIKKGEILFLGEDLAKKPENELIKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLI
                  ************************************************************
  
  COL             KHKNYSKAQAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKVLIA
  N315            KHKNYSKAQAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKVLIA
  NCTC8325        KHKNYSKAQAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKVLIA
  Newman          KHKNYSKAQAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKVLIA
  USA300_FPR3757  KHKNYSKAQAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKVLIA
                  ************************************************************
  
  COL             DEPTTALDVTMQAQILDLMKELQQKIDTAIIFITHDLGVVANIADRVAVMYGGQMVETGD
  N315            DEPTTALDVTMQAQILDLMKELQQKIDTAIIFITHDLGVVANIADRVAVMYGGQMVETGD
  NCTC8325        DEPTTALDVTMQAQILDLMKELQQKIDTAIIFITHDLGVVANIADRVAVMYGGQMVETGD
  Newman          DEPTTALDVTMQAQILDLMKELQQKIDTAIIFITHDLGVVANIADRVAVMYGGQMVETGD
  USA300_FPR3757  DEPTTALDVTMQAQILDLMKELQQKIDTAIIFITHDLGVVANIADRVAVMYGGQMVETGD
                  ************************************************************
  
  COL             VNEIFYDPKHPYTWGLLSSMPDLSTTNDTPLLAIPGAPPDLLHPPKGDAFARRSQYALDI
  N315            VNEIFYDPKHPYTWGLLSSMPDLSTTNDTPLLAIPGAPPDLLHPPKGDAFARRSQYALDI
  NCTC8325        VNEIFYDPKHPYTWGLLSSMPDLSTTNDTPLLAIPGAPPDLLHPPKGDAFARRSQYALDI
  Newman          VNEIFYDPKHPYTWGLLSSMPDLSTTNDTPLLAIPGAPPDLLHPPKGDAFARRSQYALDI
  USA300_FPR3757  VNEIFYDPKHPYTWGLLSSMPDLSTTNDTPLLAIPGAPPDLLHPPKGDAFARRSQYALDI
                  ************************************************************
  
  COL             DFKVEPPWFKVSPTHFVKSWLLDARAPKVELPELVKQRMKPMPNNYEKPLKVERVSFNEK
  N315            DFKVEPPWFKVSPTHFVKSWLLDARAPKVELPELVKQRMKPMPNNYEKPLKVERVSFNEK
  NCTC8325        DFKVEPPWFKVSPTHFVKSWLLDARAPKVELPELVKQRMKPMPNNYEKPLKVERVSFNEK
  Newman          DFKVEPPWFKVSPTHFVKSWLLDARAPKVELPELVKQRMKPMPNNYEKPLKVERVSFNEK
  USA300_FPR3757  DFKVEPPWFKVSPTHFVKSWLLDARAPKVELPELVKQRMKPMPNNYEKPLKVERVSFNEK
                  ************************************************************