PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003128000
• symbol^?: fabF
• synonym:
• description^?: beta-ketoacyl-[acyl-carrier-protein] synthase II

  descriptions from strain specific annotations:

  • beta-ketoacyl-[acyl-carrier-protein] synthase II
  • 3-oxoacyl-(acyl-carrier-protein) synthase II
  • 3-oxoacyl-ACP synthase
  • 3-oxoacyl-[acyl-carrier-protein] synthase
  • 3-oxoacyl- synthase
  • beta-ketoacyl-ACP synthase II
  • 3-oxoacyl-[acyl-carrier-protein] synthase, KASII
  • 3-oxoacyl-[acyl-carrier-protein] synthase 2
  • 3-oxoacyl-ACP synthase II
  • 3-oxoacyl- synthase ,KASII
  • beta-ketoacyl-acyl-carrier-protein synthase II
  • Beta-ketoacyl synthase-like protein
• strand^?: +
• coordinates^?: 3511111..3512355
• synteny block^?: BlockID0022200
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0988 (fabF)
N315:
SA0843 (fab)
NCTC8325:
SAOUHSC_00921
Newman:
NWMN_0854
USA300_FPR3757:
SAUSA300_0886 (fabF)
04-02981:
SA2981_0939
08BA02176:
C248_1007 (fabF)
11819-97:
MS7_0939 (fabF)
6850:
RSAU_000859 (fabF)
71193:
ST398NM01_0980
ECT-R 2:
ECTR2_839 (fabF)
ED133:
SAOV_0930
ED98:
SAAV_0945 (fabF)
HO 5096 0412:
SAEMRSA15_08130 (fabF)
JH1:
SaurJH1_1002
JH9:
SaurJH9_0983
JKD6008:
SAA6008_00937 (fabB)
JKD6159:
SAA6159_00840 (fabB)
LGA251:
SARLGA251_09010 (fabF)
M013:
M013TW_0906
MRSA252:
SAR0947 (fabF)
MSHR1132:
SAMSHR1132_08320
MSSA476:
SAS0854
Mu3:
SAHV_0979
Mu50:
SAV0984
MW2:
MW0866 (fab)
RF122:
SAB0849 (fabF)
ST398:
SAPIG0980 (fabF)
T0131:
SAT0131_01017 (atpB)
TCH60:
HMPREF0772_12261 (fabF)
TW20:
SATW20_09830 (fabF)
USA300_TCH1516:
USA300HOU_0942 (fabH2)
VC40:
SAVC_04090

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNI
  N315            MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNI
  NCTC8325        MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNI
  Newman          MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNI
  USA300_FPR3757  MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNI
                  ************************************************************
  
  COL             EDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAH
  N315            EDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINDNTADRIGVWIGSGIGGMETFEIAH
  NCTC8325        EDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAH
  Newman          EDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAH
  USA300_FPR3757  EDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAH
                  ***********************************:************************
  
  COL             KQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQ
  N315            KQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQ
  NCTC8325        KQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQ
  Newman          KQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQ
  USA300_FPR3757  KQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQ
                  ************************************************************
  
  COL             RGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGILV
  N315            RGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGILV
  NCTC8325        RGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGILV
  Newman          RGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGILV
  USA300_FPR3757  RGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGILV
                  ************************************************************
  
  COL             IESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQY
  N315            IESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQY
  NCTC8325        IESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQY
  Newman          IESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQY
  USA300_FPR3757  IESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQY
                  ************************************************************
  
  COL             LNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKD
  N315            LNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKD
  NCTC8325        LNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKD
  Newman          LNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKD
  USA300_FPR3757  LNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVNSTKSMTGHLLGATGGIEAIFSALSIKD
                  ********************************.***************************
  
  COL             SKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFEA
  N315            SKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFEA
  NCTC8325        SKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFEA
  Newman          SKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFEA
  USA300_FPR3757  SKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFEA
                  ******************************************************