PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003059000
• symbol^?: rocD
• synonym:
• description^?: ornithine--oxo-acid transaminase

  descriptions from strain specific annotations:

  • ornithine--oxo-acid transaminase
  • Ornithine aminotransferase 2
  • ornithine aminotransferase, putative
  • Acetylornithine aminotransferase 2
  • Ornithine aminotransferase
• strand^?: +
• coordinates^?: 3449007..3450218
• synteny block^?: BlockID0021670
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0960 (rocD)
N315:
SA0818 (rocD)
NCTC8325:
SAOUHSC_00894 (rocD)
Newman:
NWMN_0827 (rocD)
USA300_FPR3757:
SAUSA300_0860 (rocD)
04-02981:
SA2981_0912 (rocD)
08BA02176:
C248_0956 (rocD)
11819-97:
MS7_0912
6850:
RSAU_000834 (rocD2)
71193:
ST398NM01_0940
ECT-R 2:
ECTR2_813 (rocD)
ED133:
SAOV_0903
ED98:
SAAV_0918 (rocD)
HO 5096 0412:
SAEMRSA15_07870 (rocD)
JH1:
SaurJH1_0976 (rocD)
JH9:
SaurJH9_0957 (rocD)
JKD6008:
SAA6008_00910 (rocD)
JKD6159:
SAA6159_00816 (rocD)
LGA251:
SARLGA251_08750 (rocD)
M013:
M013TW_0876
MRSA252:
SAR0919 (rocD)
MSHR1132:
SAMSHR1132_08090
MSSA476:
SAS0827 (rocD)
Mu3:
SAHV_0952 (rocD)
Mu50:
SAV0957 (rocD)
MW2:
MW0839 (rocD)
RF122:
SAB0824 (rocD)
ST398:
SAPIG0940 (rocD)
T0131:
SAT0131_00989
TCH60:
HMPREF0772_12289 (rocD2)
TW20:
SATW20_09570 (rocD)
USA300_TCH1516:
USA300HOU_0916 (rocD)
VC40:
SAVC_03960 (rocD)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
  N315            MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
  NCTC8325        MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
  Newman          MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
  USA300_FPR3757  MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPK
                  ************************************************************
  
  COL             IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
  N315            IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
  NCTC8325        IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
  Newman          IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
  USA300_FPR3757  IIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW
                  ************************************************************
  
  COL             AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
  N315            AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
  NCTC8325        AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
  Newman          AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
  USA300_FPR3757  AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALK
                  ************************************************************
  
  COL             AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
  N315            AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
  NCTC8325        AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
  Newman          AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
  USA300_FPR3757  AAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFA
                  ************************************************************
  
  COL             TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
  N315            TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
  NCTC8325        TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
  Newman          TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
  USA300_FPR3757  TDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAAL
                  ************************************************************
  
  COL             DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
  N315            DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
  NCTC8325        DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
  Newman          DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
  USA300_FPR3757  DVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEG
                  ************************************************************
  
  COL             LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
  N315            LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
  NCTC8325        LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
  Newman          LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
  USA300_FPR3757  LLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
                  ************************************