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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002661000
- symbol?: saHPF
- synonym:
- description?: ribosomal subunit interface protein
- ribosomal subunit interface protein
- ribosome-associated inhibitor protein, putative
- ribosome-associated translation inhibitor RaiA
- sigma 54 modulation protein
- putative S30EA family ribosomal protein
- ribosome-associated factor Y
- ribosome-associated inhibitor protein Y
- S30EA family ribosomal protein
- sigma 54 modulation protein/ribosomal protein S30EA
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3157773..3158345
- synteny block?: BlockID0018960
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0730
08BA02176:
C248_0839
11819-97:
MS7_0802 (raiA)
6850:
RSAU_000727
71193:
ST398NM01_0828
ECT-R 2:
ECTR2_702 (raiA)
ED133:
SAOV_0789
ED98:
SAAV_0714
HO 5096 0412:
SAEMRSA15_06780
JH1:
SaurJH1_0793
JH9:
SaurJH9_0776
JKD6008:
SAA6008_00767 (yfiA)
JKD6159:
SAA6159_00707 (yfiA)
LGA251:
SARLGA251_06850
M013:
M013TW_0739
MRSA252:
SAR0806
MSHR1132:
SAMSHR1132_06970
MSSA476:
SAS0717
Mu3:
SAHV_0749
Mu50:
SAV0752
MW2:
MW0714
RF122:
SAB0704
ST398:
SAPIG0828
T0131:
SAT0131_00824
TCH60:
HMPREF0772_12430 (yfiA)
TW20:
SATW20_08270
USA300_TCH1516:
USA300HOU_0779
VC40:
SAVC_03395
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPL
N315 MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPL
NCTC8325 MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPL
Newman MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPL
USA300_FPR3757 MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPL
************************************************************
COL KNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQ
N315 KNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQ
NCTC8325 KNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQ
Newman KNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQ
USA300_FPR3757 KNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQ
************************************************************
COL VDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFIDRETDGTSIVYRRKDG
N315 VDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDG
NCTC8325 VDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDG
Newman VDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDG
USA300_FPR3757 VDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDG
******************************************* ****************
COL KYGLIQTSEQ
N315 KYGLIQTSEQ
NCTC8325 KYGLIQTSEQ
Newman KYGLIQTSEQ
USA300_FPR3757 KYGLIQTSEQ
**********