PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002451000
• symbol^?: —
• synonym:
• description^?: DUF443 domain-containing protein
• strand^?: +
• coordinates^?: 2961845..2962493
• synteny block^?: BlockID0016840
• occurrence^?: in 35% of 34 strains

⊟Orthologs

COL:
SACOL0645
N315:
—
NCTC8325:
SAOUHSC_00586
Newman:
NWMN_0561
USA300_FPR3757:
SAUSA300_0581
JSNZ:
JSNZ_000556
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_00605
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0557
Mu3:
—
Mu50:
—
MW2:
MW0553
RF122:
—
ST398:
—
T0131:
SAT0131_00662
TCH60:
—
TW20:
SATW20_06670
USA300_TCH1516:
USA300HOU_0593
VC40:
SAVC_02575

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757
JSNZ

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MEILLCEVRVVNKNPRYRIIKYKNDYLMIDLVSTWLVLFFPFINWLIPKKYVQISREDFD
  NCTC8325        MEILLCEVRVVNKNPRYRIIKYKNDYLMIDLVSTWLVLFFPFINWLIPKKYVQISREDFD
  Newman          MEILLCEVRVVNKNPRYRIIKYKNDYLMIDLVSTWLVLFFPFINWLIPKKYVQISREDFD
  USA300_FPR3757  MEILLCEVRVVNKNPRYRIIKYKNDYLMIDLVSTWLVLFFPFINWLIPKKYVQISREDFD
                  ************************************************************
  
  COL             NLNIVKPVKNKALWPAIGSILLFGTMFRDKIYIPDSHLEKNCVIIICSVLLLSILVFYIY
  NCTC8325        NLNIVKPVKNKALWPAIGSILLFGTMFRDKIYIPDSHLEKNCVIIICSVLLLSILVFYIY
  Newman          NLNIVKPVKNKALWPAIGSILLFGTMFRDKIYIPDSHLEKNCVIIICSVLLLSILVFYIY
  USA300_FPR3757  NLNIVKPVKNKALWPAIGSILLFGTMFRDKIYIPDSHLEKNCVIIICSVLLLSILVFYIY
                  ************************************************************
  
  COL             LNQKVKLSIYNDRSSNGKIMIFPSFKNLCFVLFSYFFCGGLSIMFLDVLISLSIQNIIVF
  NCTC8325        LNQKVKLSIYNDRSSNGKIMIFPSFKNLCFVLFSYFFCGGLSIMFLDVLISLSIQNIIVF
  Newman          LNQKVKLSIYNDRSSNGKIMIFPSFKNLCFVLFSYFFCGGLSIMFLDVLISLSIQNIIVF
  USA300_FPR3757  LNQKVKLSIYNDRSSNGKIMIFPSFKNLCFVLFSYFFCGGLSIMFLDVLISLSIQNIIVF
                  ************************************************************
  
  COL             IAWVIMTMLFFFINMSSIIDKKIHVIYLRSYKY
  NCTC8325        IAWVIMTMLFFFINMSSIIDKKIHVIYLRSYKY
  Newman          IAWVIMTMLFFFINMSSIIDKKIHVIYLRSYKY
  USA300_FPR3757  IAWVIMTMLFFFINMSSIIDKKIHVIYLRSYKY
                  *********************************