PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002450000
• symbol^?: —
• synonym:
• description^?: DUF443 family protein

  descriptions from strain specific annotations:

  • DUF443 family protein
  • staphylococcus aureus paralogous family
• strand^?: +
• coordinates^?: 2961040..2964620
• synteny block^?: BlockID0016880
• occurrence^?: in 47% of 34 strains

⊟Orthologs

COL:
SACOL0652
N315:
—
NCTC8325:
SAOUHSC_00598
Newman:
NWMN_0569
USA300_FPR3757:
SAUSA300_0586
JSNZ:
JSNZ_000564
04-02981:
—
08BA02176:
C248_0680
11819-97:
—
6850:
RSAU_000549
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_00614
JKD6159:
—
LGA251:
—
M013:
M013TW_0584
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0565
Mu3:
—
Mu50:
—
MW2:
MW0560
RF122:
SAB0549
ST398:
SAPIG0677
T0131:
—
TCH60:
—
TW20:
SATW20_06740
USA300_TCH1516:
USA300HOU_0602
VC40:
SAVC_02620

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757
JSNZ

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  COL             METLLCETENINKNPKYRIIKYKDEYLMIDLVSTWLALFFPMINWLIPKKYVKISEKDFE
  NCTC8325        ---------------------------MIDLVSTWLALFFPMINWLIPKKYVKISEKDFE
  Newman          ---ML------HHNTRY-------------------------------------------
  USA300_FPR3757  ---------------------------MIDLVSTWLALFFPMINWLIPKKYVKISEKDFE
  JSNZ            ---MLCETENINKNPKYRIIKYKDEYLMIDLVSTWLALFFPMINWLIPKKYFKISEKDFE
                                                                              
  
  COL             TLNIVKTAKINSFWPVAGSTVLFGVMLRRYSHLFIVKYEYSIVILICCIIILGIFLFFLY
  NCTC8325        TLNIVKTAKINSFWPVAGSTVLFGVMLRRYSHLFIVKYEYSIVILICCIIILGIFLFFLY
  Newman          ------------------------------------------------------FSVFLY
  USA300_FPR3757  TLNIVKTAKINSFWPVAGSTVLFGVMLRRYSHLFIVKYEYSIVILICCIIILGIFLFFLY
  JSNZ            TLNIVKTTKINSFWPVAGSTVLFGVMLRRYSHLFIVKYEYSIVILICCIIILGIFLFFLY
                                                                        * .***
  
  COL             LNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQNIIL
  NCTC8325        LNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQNIIL
  Newman          LNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQNIIL
  USA300_FPR3757  LNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQNIIL
  JSNZ            LNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQNIIL
                  ************************************************************
  
  COL             FITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
  NCTC8325        FITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
  Newman          FITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
  USA300_FPR3757  FITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
  JSNZ            FITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
                  ************************************