PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002357000
• symbol^?: pdxK
• synonym:
• description^?: phosphomethylpyrimidine kinase

  descriptions from strain specific annotations:

  • phosphomethylpyrimidine kinase
  • hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
  • bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
  • phosphomethylpyrimidine kinase, putative
  • hydroxymethylpyrimidine kinase
  • phosphomethylpyrimidine kinase (HMP-phosphate kinase)(HMP-P kinase)
  • Putative pyridoxine kinase
• strand^?: -
• coordinates^?: 2895924..2896754
• synteny block^?: BlockID0016560
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0626 (thiD1)
N315:
SA0537
NCTC8325:
SAOUHSC_00562
Newman:
NWMN_0543 (thiD)
USA300_FPR3757:
SAUSA300_0562 (thiD)
04-02981:
SA2981_0557
08BA02176:
C248_0655
11819-97:
MS7_0569 (pdxK)
6850:
RSAU_000531 (thiD1)
71193:
ST398NM01_0654
ECT-R 2:
ECTR2_533 (thiD)
ED133:
SAOV_0614c (thiD1)
ED98:
SAAV_0542 (thiD1)
HO 5096 0412:
SAEMRSA15_05070
JH1:
SaurJH1_0617
JH9:
SaurJH9_0603
JKD6008:
SAA6008_00587 (thiD1)
JKD6159:
SAA6159_00533 (thiD1)
LGA251:
SARLGA251_05150 (thiD)
M013:
M013TW_0567
MRSA252:
SAR0585
MSHR1132:
SAMSHR1132_05230
MSSA476:
SAS0538
Mu3:
SAHV_0578
Mu50:
SAV0580
MW2:
MW0535
RF122:
SAB0530c
ST398:
SAPIG0654 (thiD)
T0131:
SAT0131_00640
TCH60:
HMPREF0772_12609 (thiD2)
TW20:
SATW20_06490 (thiD)
USA300_TCH1516:
USA300HOU_0573 (thiD)
VC40:
SAVC_02485

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MALKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDV
  N315            MALKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDV
  NCTC8325        MALKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDV
  Newman          MALKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDV
  USA300_FPR3757  MALKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDV
                  ************************************************************
  
  COL             FEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVCKGEDEVLNPG
  N315            FEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVCKGEDEVLNPG
  NCTC8325        FEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVCKGEDEVLNPG
  Newman          FEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVCKGEDEVLNPG
  USA300_FPR3757  FEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVCKGEDEVLNPG
                  ************************************************************
  
  COL             NTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKA
  N315            NTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKA
  NCTC8325        NTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKA
  Newman          NTEAMIKYLLPKATVVAPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKA
  USA300_FPR3757  NTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKA
                  ****************:*******************************************
  
  COL             LDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAF
  N315            LDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAF
  NCTC8325        LDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAF
  Newman          LDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAF
  USA300_FPR3757  LDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAF
                  ************************************************************
  
  COL             VASAIKNGWKMNDFVGPVDHGAYNRIEHIDVEVTEV
  N315            VASAIKNGWKMNDFVGPVDHGAYNRIEHIDVEVTEV
  NCTC8325        VASAIKNGWKMNDFVGPVDHGAYNRIEHIDVEVTEV
  Newman          VASAIKNGWKMNDFVGPVDHGAYNRIEHIDVEVTEV
  USA300_FPR3757  VASAIKNGWKMNDFVGPVDHGAYNRIEHIDVEVTEV
                  ************************************