PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002308000
• symbol^?: rplA
• synonym:
• description^?: 50S ribosomal protein L1

  descriptions from strain specific annotations:

  • 50S ribosomal protein L1
  • 50S ribosomalprotein L1p (L10Ae)
• strand^?: +
• coordinates^?: 2824812..2825501
• synteny block^?: BlockID0016070
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0584 (rplA)
N315:
SA0496 (rplA)
NCTC8325:
SAOUHSC_00519 (rplA)
Newman:
NWMN_0500 (rplA)
USA300_FPR3757:
SAUSA300_0523 (rplA)
04-02981:
SA2981_0515 (rplA)
08BA02176:
C248_0613 (rplA)
11819-97:
MS7_0528 (rplA)
6850:
RSAU_000490 (rplA)
71193:
ST398NM01_0613
ECT-R 2:
ECTR2_492 (rplA)
ED133:
SAOV_0573 (rplA)
ED98:
SAAV_0500 (rplA)
HO 5096 0412:
SAEMRSA15_04650 (rplA)
JH1:
SaurJH1_0575 (rplA)
JH9:
SaurJH9_0561 (rplA)
JKD6008:
SAA6008_00544 (rplA)
JKD6159:
SAA6159_00491 (rplA)
LGA251:
SARLGA251_04740 (rplA)
M013:
M013TW_0523
MRSA252:
SAR0543 (rplA)
MSHR1132:
SAMSHR1132_04820
MSSA476:
SAS0496 (rplA)
Mu3:
SAHV_0536 (rplA)
Mu50:
SAV0538 (rplA)
MW2:
MW0493 (rplA)
RF122:
SAB0489 (rplA)
ST398:
SAPIG0613 (rplA)
T0131:
SAT0131_00590 (bsaA2)
TCH60:
HMPREF0772_12651 (rplA)
TW20:
SATW20_06080 (rplA)
USA300_TCH1516:
USA300HOU_0532 (rplA)
VC40:
SAVC_02280 (rplA)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIR
  N315            MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIR
  NCTC8325        MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIR
  Newman          MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIR
  USA300_FPR3757  MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIR
                  ************************************************************
  
  COL             GAVVLPNGTGKSQSVLVFAKGDKIAEAEAAGADYVGEAEYVQKIQQGWFDFDVVVATPDM
  N315            GAVVLPNGTGKSQSVLVFAKGDKIAEAEAAGTDYVGEAEYVQKIQQGWFDFDVVVATPDM
  NCTC8325        GAVVLPNGTGKSQSVLVFAKGDKIAEAEAAGADYVGEAEYVQKIQQGWFDFDVVVATPDM
  Newman          GAVVLPNGTGKSQSVLVFAKGDKIAEAEAAGADYVGEAEYVQKIQQGWFDFDVVVATPDM
  USA300_FPR3757  GAVVLPNGTGKSQSVLVFAKGDKIAEAEAAGADYVGEAEYVQKIQQGWFDFDVVVATPDM
                  *******************************:****************************
  
  COL             MGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSF
  N315            MGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSF
  NCTC8325        MGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSF
  Newman          MGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSF
  USA300_FPR3757  MGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSF
                  ************************************************************
  
  COL             TDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKIDTASFK
  N315            TDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKIDTASFK
  NCTC8325        TDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKIDTASFK
  Newman          TDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKIDTASFK
  USA300_FPR3757  TDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKIDTASFK
                  **************************************************