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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002228000
- symbol?: —
- synonym:
- description?: TatD family deoxyribonuclease
- TatD family deoxyribonuclease
- TatD family hydrolase
- TatD related DNase
- TatD-related Mg-dependent DNase, putative
- deoxyribonuclease
- Hydrolase, TatD family
- metallo-dependent hydrolase
- Mg-dependent DNase
- Putative deoxyribonuclease YcfH
- putative TatD related DNase
- sec-independent hydrolase
- TatD family Dnase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2738393..2739166
- synteny block?: BlockID0015270
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0466 (ycfH)
08BA02176:
C248_0546
11819-97:
MS7_0468
6850:
RSAU_000428 (tatD)
71193:
ST398NM01_0557
ECT-R 2:
ECTR2_431
ED133:
SAOV_0513
ED98:
SAAV_0438
HO 5096 0412:
SAEMRSA15_04170
JH1:
SaurJH1_0525
JH9:
SaurJH9_0512
JKD6008:
SAA6008_00495 (tatP)
JKD6159:
SAA6159_00442 (tatP)
LGA251:
SARLGA251_04250
M013:
M013TW_0460
MRSA252:
SAR0492
MSHR1132:
SAMSHR1132_04350
MSSA476:
SAS0448
Mu3:
SAHV_0488
Mu50:
SAV0491
MW2:
MW0446
RF122:
SAB0440
ST398:
SAPIG0557
T0131:
SAT0131_00536
TCH60:
HMPREF0772_10029
TW20:
SATW20_05590
USA300_TCH1516:
USA300HOU_0491
VC40:
SAVC_02040
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
N315 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
NCTC8325 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
Newman MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
USA300_FPR3757 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
************************************************************
COL GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
N315 GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
NCTC8325 GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
Newman GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
USA300_FPR3757 GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
************************************************************
COL LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
N315 LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
NCTC8325 LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
Newman LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
USA300_FPR3757 LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
************************************************************
COL FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
N315 FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
NCTC8325 FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
Newman FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
USA300_FPR3757 FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
************************************************************
COL VCEQTTKNAEKLFNLNS
N315 VCEQTTKNAEKLFNLNS
NCTC8325 VCEQTTKNAEKLFNLNS
Newman VCEQTTKNAEKLFNLNS
USA300_FPR3757 VCEQTTKNAEKLFNLNS
*****************