Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001071000
- symbol?: —
- synonym:
- description?: xylose isomerase
- xylose isomerase
- sugar phosphate isomerase/epimerase
- sugar phosphate isomerase/epimerase family protein
- Inosose isomerase
- IolE protein-like protein
- xylose isomerase-like TIM barrel family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1348209..1349220
- synteny block?: BlockID0005930
- occurrence?: in 100% of 34 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0220
08BA02176:
C248_0203
11819-97:
MS7_0205
6850:
RSAU_000163
71193:
ST398NM01_0229
ECT-R 2:
ECTR2_180
ED133:
SAOV_0157
ED98:
SAAV_0185
HO 5096 0412:
SAEMRSA15_01780
JH1:
SaurJH1_0210
JH9:
SaurJH9_0204
JKD6008:
SAA6008_00188 (iolE)
JKD6159:
SAA6159_00194 (iolE)
LGA251:
SARLGA251_01830
M013:
M013TW_0199
MRSA252:
SAR0211
MSHR1132:
SAMSHR1132_01850
MSSA476:
SAS0195
Mu3:
SAHV_0218
Mu50:
SAV0219
MW2:
MW0195
RF122:
SAB0158
ST398:
SAPIG0229
T0131:
SAT0131_00205 (holA)
TCH60:
HMPREF0772_10288
TW20:
SATW20_02200
USA300_TCH1516:
USA300HOU_0226
VC40:
SAVC_00835
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL --------------MKIGVFSVLFYDKNFEDMLDYVSESGLDMIEVGTGGNPGDKFCKLD
N315 --------------MKIGVFSVLFYDKNFEDMLDYVAESGLDMIEVGTGGNPGDKFCKLD
NCTC8325 --------------MKIGVFSVLFYDKNFEDMLDYVSESGLDMIEVGTGGNPGDKFCKLD
Newman MIQNSQYKKKECFSMKIGVFSVLFYDKNFEDMLDYVSESGLDMIEVGTGGNPGDKFCKLD
USA300_FPR3757 --------------MKIGVFSVLFYDKNFEDMLDYVSESGLDMIEVGTGGNPGDKFCKLD
**********************:***********************
COL ELLENEDKRQAFMKSITDRGLQISGFSCHNNPISPDPIEAKEADETLRKTIRLANLLDVP
N315 ELLENEDKRQAFMKSITDRGLQISGFSCHNNPISPDPIEAKEADETLRKTIRLANLLDVP
NCTC8325 ELLENEDKRQAFMKSITDRGLQISGFSCHNNPISPDPIEAKEADETLRKTIRLANLLDVP
Newman ELLENEDKRQAFMKSITDRGLQISGFSCHNNPISPDPIEAKEADETLRKTIRLANLLDVP
USA300_FPR3757 ELLENEDKRQAFMKSITDRGLQISGFSCHNNPISPDPIEAKEADETLRKTIRLANLLDVP
************************************************************
COL VVNTFSGIAGSDDTAKKPNWPVTPWPTAYSEIYDYQWNEKLIPYWQDLAEFAKEQDVKIA
N315 VVNTFSGIAGSDDTAKKPNWPVTPWPTAYSEIYDYQWNEKLIPYWQDLAEFAKEQDVKIA
NCTC8325 VVNTFSGIAGSDDTAKKPNWPVTPWPTAYSEIYDYQWNEKLIPYWQDLAEFAKEQDVKIA
Newman VVNTFSGIAGSDDTAKKPNWPVTPWPTAYSEIYDYQWNEKLIPYWQDLAEFAKEQDVKIA
USA300_FPR3757 VVNTFSGIAGSDDTAKKPNWPVTPWPTAYSEIYDYQWNEKLIPYWQDLAEFAKEQDVKIA
************************************************************
COL IELHAGFLVHTPYTMLKLREATNEYIGANLDPSHLWWQGIDPIAAIRILGQANAIHHFHA
N315 IELHAGFLVHTPYTMLKLREATNEYIGANLDPSHLWWQGIDPIAAIRILGQANAIHHFHA
NCTC8325 IELHAGFLVHTPYTMLKLREATNEYIGANLDPSHLWWQGIDPIAAIRILGQANAIHHFHA
Newman IELHAGFLVHTPYTMLKLREATNEYIGANLDPSHLWWQGIDPIAAIRILGQANAIHHFHA
USA300_FPR3757 IELHAGFLVHTPYTMLKLREATNEYIGANLDPSHLWWQGIDPIAAIRILGQANAIHHFHA
************************************************************
COL KDTYINQENVNMYGLTDMQPYGNVATRAWTFRTVGYGHSPYVWADIISQLIINGYDYVLS
N315 KDTYINQENVNMYGLTDMQPYGNVATRAWTFRTVGYGHSPYVWADIISQLIINGYDYVLS
NCTC8325 KDTYINQENVNMYGLTDMQPYGNVATRAWTFRTVGYGHSPYVWADIISQLIINGYDYVLS
Newman KDTYINQENVNMYGLTDMQPYGNVATRAWTFRTVGYGHSPYVWADIISQLIINGYDYVLS
USA300_FPR3757 KDTYINQENVNMYGLTDMQPYGNVATRAWTFRTVGYGHSPYVWADIISQLIINGYDYVLS
************************************************************
COL IEHEDPIMSVEEGFQKACQTLKSVNIYDKPADMWWA
N315 IEHEDPIMSVEEGFQKACQTLKSVNIYDKPADMWWA
NCTC8325 IEHEDPIMSVEEGFQKACQTLKSVNIYDKPADMWWA
Newman IEHEDPIMSVEEGFQKACQTLKSVNIYDKPADMWWA
USA300_FPR3757 IEHEDPIMSVEEGFQKACQTLKSVNIYDKPADMWWA
************************************