Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001030000
- symbol?: —
- synonym:
- description?: indolepyruvate decarboxylase
- indolepyruvate decarboxylase
- indole-3-pyruvate decarboxylase
- alpha-keto acid decarboxylase family protein
- indole-3-pyruvate decarboxylase, putative
- pyruvate decarboxylase
- Alpha-keto-acid decarboxylase
- branched-chain alpha-ketoacid decarboxylase
- indole-3-pyruvate decarboxylase (Indolepyruvatedecarboxylase)
- putative thiamine pyrophosphate enzyme
- Pyruvate decarboxylase, Alpha-keto-acid decarboxylase
- thiamine pyrophosphate binding domain-containing protein
- thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein
- thiamine pyrophosphate TPP binding domain-containing protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1302359..1303999
- synteny block?: BlockID0005570
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0189
08BA02176:
C248_0179
11819-97:
MS7_0181 (kdcA)
6850:
RSAU_000139 (ipdC)
71193:
ST398NM01_0205
ECT-R 2:
ECTR2_151
ED133:
SAOV_0132 (ipdC)
ED98:
SAAV_0156 (ipdC)
HO 5096 0412:
SAEMRSA15_01530
JH1:
SaurJH1_0178
JH9:
SaurJH9_0173
JKD6008:
SAA6008_00166 (ipdC)
JKD6159:
SAA6159_00169 (ipdC)
LGA251:
SARLGA251_01590
M013:
M013TW_0175
MRSA252:
SAR0189
MSHR1132:
SAMSHR1132_01630
MSSA476:
SAS0163
Mu3:
SAHV_0187
Mu50:
SAV0188
MW2:
MW0162
RF122:
SAB0128c
ST398:
SAPIG0205
T0131:
SAT0131_00180
TCH60:
HMPREF0772_10311 (ipdC)
TW20:
SATW20_01980
USA300_TCH1516:
USA300HOU_0201
VC40:
SAVC_00705
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKQRIGAYLIDAIHRAGVDKIFGVPGDFNLAFLDDIISNPNVDWVGNTNELNASYAADGY
N315 MKQRIGAYLIDAFHRAGVDKIFGVPGDFNLAFLDDIISNPNVDWVGNTNELNASYAADGY
NCTC8325 MKQRIGAYLIDAIHRAGVDKIFGVPGDFNLAFLDDIISNPNVDWVGNTNELNASYAADGY
Newman MKQRIGAYLIDAIHRAGVDKIFGVPGDFNLAFLDDIISNPNVDWVGNTNELNASYAADGY
USA300_FPR3757 MKQRIGAYLIDAIHRAGVDKIFGVPGDFNLAFLDDIISNPNVDWVGNTNELNASYAADGY
************:***********************************************
COL ARLNGLAALVTTFGVGELSAVNGIAGSYAERIPVIAITGAPTRAVEQGGKYVHHSLGEGT
N315 ARLNGLAALVTTFGVGELSAVNGIAGSYAERIPVIAITGAPTRAVEQAGKYVHHSLGEGT
NCTC8325 ARLNGLAALVTTFGVGELSAVNGIAGSYAERIPVIAITGAPTRAVEQGGKYVHHSLGEGT
Newman ARLNGLAALVTTFGVGELSAVNGIAGSYAERIPVIAITGAPTRAVEQGGKYVHHSLGEGT
USA300_FPR3757 ARLNGLAALVTTFGVGELSAVNGIAGSYAERIPVIAITGAPTRAVEQGGKYVHHSLGEGT
***********************************************.************
COL FDDYRKMFAHITVAQGYITPENATTEIPRLINTAIAERRPVHLHLPIDVAISEIEIPTPF
N315 FDDYRKMFAHITVAQGYITPENATTEIPRLINTAIAERRPVHLHLPIDVAISEIEIPTPF
NCTC8325 FDDYRKMFAHITVAQGYITPENATTEIPRLINTAIAERRPVHLHLPIDVAISEIEIPTPF
Newman FDDYRKMFAHITVAQGYITPENATTEIPRLINTAIAERRPVHLHLPIDVAISEIEIPTPF
USA300_FPR3757 FDDYRKMFAHITVAQGYITPENATTEIPRLINTAIAERRPVHLHLPIDVAISEIEIPTPF
************************************************************
COL EVTATKYTDASTYIELLATKLHQAKQPIIITGHEINSFHLHQELEDFVNQTQIPVAQLSL
N315 EVTATKDTDASTYIELLATKLHQAKQPIIITGHEINSFHLHQELEDFVNQTQIPVAQLSL
NCTC8325 EVTATKYTDASTYIELLATKLHQAKQPIIITGHEINSFHLHQELEDFVNQTQIPVAQLSL
Newman EVTATKYTDASTYIELLATKLHQAKQPIIITGHEINSFHLHQELEDFVNQTQIPVAQLSL
USA300_FPR3757 EVTATKYTDASTYIELLATKLHQAKQPIIITGHEINSFHLHQELEDFVNQTQIPVAQLSL
****** *****************************************************
COL GKGAFNEENPYYMGIYDGKIAEDKIRDYVDNSDLILNIGAKLTDSATAGFSYQFNIDDVV
N315 GKGAFNEENPYYMGIYDGKIAEDKIRDYVDNSDLILNIGAKLTDSATAGFSYQFNIDDVV
NCTC8325 GKGAFNEENPYYMGIYDGKIAEDKIRDYVDNSDLILNIGAKLTDSATAGFSYQFNIDDVV
Newman GKGAFNEENPYYMGIYDGKIAEDKIRDYVDNSDLILNIGAKLTDSATAGFSYQFNIDDVV
USA300_FPR3757 GKGAFNEENPYYMGIYDGKIAEDKIRDYVDNSDLILNIGAKLTDSATAGFSYQFNIDDVV
************************************************************
COL MLNHHNIKIDDVTNDEISLPSLLKQLSNISYTNNATFPAYHRPTSPDYTVGTEPLTQQTY
N315 MLNHHNIKIDDVTNDEISLPSLLKQLSNISYTNSATFPAYHRPTSPDYTVGTEPLTQQTY
NCTC8325 MLNHHNIKIDDVTNDEISLPSLLKQLSNISYTNNATFPAYHRPTSPDYTVGTEPLTQQTY
Newman MLNHHNIKIDDVTNDEISLPSLLKQLSNISYTNNATFPAYHRPTSPDYTVGTEPLTQQTY
USA300_FPR3757 MLNHHNIKIDDVTNDEISLPSLLKQLSNISYTNNATFPAYHRPTSPDYTVGTEPLTQQTY
*********************************.**************************
COL FKMMQNFLKPNDVIIADQGTSFFGAYDLALYKNNTFIGQPLWGSIGYTLPATLGSQLADK
N315 FKMMQNFLKPNDVIIADQGTSFFGAYDLALYKNNTFIGQPLWGSIGYTLPATLGSQLADK
NCTC8325 FKMMQNFLKPNDVIIADQGTSFFGAYDLALYKNNTFIGQPLWGSIGYTLPATLGSQLADK
Newman FKMMQNFLKPNDVIIADQGTSFFGAYDLALYKNNTFIGQPLWGSIGYTLPATLGSQLADK
USA300_FPR3757 FKMMQNFLKPNDVIIADQGTSFFGAYDLALYKNNTFIGQPLWGSIGYTLPATLGSQLADK
************************************************************
COL DRRNLLLIGDGSLQLTVQAISTMIRQHIKPVLFVINNDGYTVERLIHGMYEPYNEIHMWD
N315 DRRNLLLIGDGSLQLTVQAISTMIRQHIKPVLFVINNDGYTVERLIHGMYEPYNEIHMWD
NCTC8325 DRRNLLLIGDGSLQLTVQAISTMIRQHIKPVLFVINNDGYTVERLIHGMYEPYNEIHMWD
Newman DRRNLLLIGDGSLQLTVQAISTMIRQHIKPVLFVINNDGYTVERLIHGMYEPYNEIHMWD
USA300_FPR3757 DRRNLLLIGDGSLQLTVQAISTMIRQHIKPVLFVINNDGYTVERLIHGMYEPYNEIHMWD
************************************************************
COL YKALPAVFGGKNVEIHDVESSKDLQDTFNAINGHPDVMHFVEVKMAVEDAPKKLIDIAKA
N315 YKALPAVFGGKNVEIHDVESSKDLQDTFNAINGHPDVMHFVEVKMSVEDAPKKLIDIAKA
NCTC8325 YKALPAVFGGKNVEIHDVESSKDLQDTFNAINGHPDVMHFVEVKMAVEDAPKKLIDIAKA
Newman YKALPAVFGGKNVEIHDVESSKDLQDTFNAINGHPDVMHFVEVKMAVEDAPKKLIDIAKA
USA300_FPR3757 YKALPAVFGGKNVEIHDVESSKDLQDTFNAINGHPDVMHFVEVKMAVEDAPKKLIDIAKA
*********************************************:**************
COL FSQQNK
N315 FSQQNK
NCTC8325 FSQQNK
Newman FSQQNK
USA300_FPR3757 FSQQNK
******