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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000915000
- symbol?: sbnB
- synonym:
- description?: 2,3-diaminopropionate biosynthesis protein SbnB
- 2,3-diaminopropionate biosynthesis protein SbnB
- ornithine cyclodeaminase
- 2,3-diaminopropionate biosynthesis protein SbnB-like protein
- N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate dehydrogenase SbnB
- ornithine cyclodeaminase, putative
- ornithine cyclodeaminase/mu-crystallin family protein
- Ornithine cyclodeaminase / Siderophore staphylobactin biosynthesis protein SbnB
- Ornithine cyclodeaminase family protein
- ornithine cyclodeaminase protein
- putative ornithine cyclodeaminase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1183845..1184855
- synteny block?: BlockID0004520
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0118 (sbnB)
08BA02176:
C248_0105
11819-97:
MS7_0109
6850:
RSAU_000071
71193:
ST398NM01_0128
ECT-R 2:
ECTR2_73
ED133:
SAOV_0064
ED98:
SAAV_0085
HO 5096 0412:
SAEMRSA15_00830 (sbnB)
JH1:
SaurJH1_0108
JH9:
SaurJH9_0104
JKD6008:
SAA6008_00095
JKD6159:
SAA6159_00100
LGA251:
SARLGA251_00920 (sbnB)
M013:
M013TW_0107
MRSA252:
SAR0120
MSHR1132:
SAMSHR1132_00930
MSSA476:
SAS0091
Mu3:
SAHV_0116
Mu50:
SAV0117
MW2:
MW0090
RF122:
SAB0056
ST398:
SAPIG0128
T0131:
SAT0131_00103
TCH60:
HMPREF0772_10380 (ocd2)
TW20:
SATW20_01290 (sbnB)
USA300_TCH1516:
USA300HOU_0128 (ocd)
VC40:
SAVC_00325
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ----MLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADR
N315 MNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADR
NCTC8325 MNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADR
Newman MNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADR
USA300_FPR3757 MNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADR
********************************************************
COL IIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISS
N315 IIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISS
NCTC8325 IIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISS
Newman IIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISS
USA300_FPR3757 IIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISS
************************************************************
COL MRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIERVFVYDQFSEACAR
N315 MRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIKRVFVYDQFSEACAR
NCTC8325 MRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIERVFVYDQFSEACAR
Newman MRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIERVFVYDQFSEACAR
USA300_FPR3757 MRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIERVFVYDQFSEACAR
*********************************************:**************
COL FVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
N315 FVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
NCTC8325 FVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
Newman FVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
USA300_FPR3757 FVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV
************************************************************
COL HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDE
N315 HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDE
NCTC8325 HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDE
Newman HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDE
USA300_FPR3757 HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDE
************************************************************
COL IILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY
N315 IILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY
NCTC8325 IILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY
Newman IILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY
USA300_FPR3757 IILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY
************************************