PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000025000
• symbol^?: rplI
• synonym:
• description^?: 50S ribosomal protein L9
• strand^?: +
• coordinates^?: 26247..26699
• synteny block^?: BlockID0000220
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0015 (rplI)
N315:
SA0014 (rplI)
NCTC8325:
SAOUHSC_00017 (rplI)
Newman:
NWMN_0014 (rplI)
USA300_FPR3757:
SAUSA300_0015 (rplI)
04-02981:
SA2981_0015 (rplI)
08BA02176:
C248_0015 (rplI)
11819-97:
MS7_0015 (rplI)
6850:
RSAU_000015 (rplI)
71193:
ST398NM01_0015
ECT-R 2:
ECTR2_15 (rplI)
ED133:
SAOV_0015 (rplI)
ED98:
SAAV_0017 (rplI)
HO 5096 0412:
SAEMRSA15_00150 (rplI)
JH1:
SaurJH1_0015 (rplI)
JH9:
SaurJH9_0015 (rplI)
JKD6008:
SAA6008_00015 (rplI)
JKD6159:
SAA6159_00015 (rplI)
LGA251:
SARLGA251_00150 (rplI)
M013:
M013TW_0016
MRSA252:
SAR0015 (rplI)
MSHR1132:
SAMSHR1132_00150
MSSA476:
SAS0015 (rplI)
Mu3:
SAHV_0015 (rplI)
Mu50:
SAV0015 (rplI)
MW2:
MW0015 (rplI)
RF122:
SAB0015 (rplI)
ST398:
SAPIG0015 (rplI)
T0131:
SAT0131_00017 (ndk)
TCH60:
HMPREF0772_10453 (rplI)
TW20:
SATW20_00150 (rplI)
USA300_TCH1516:
USA300HOU_0015 (rplI)
VC40:
SAVC_00075 (rplI)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKVIFTQDV--KGKGKKGEVKEVPVGYANNFLLKKNYAVEATPGNLKQLELQKKRAKQER
  N315            MKVIFTQDV--KGKGKKGEVKEVPVGYANNFLLKKNYAVEATPGNLKQLELQKKRAKQER
  NCTC8325        MKVIFTQDVKGKGKGKKGEVKEVPVGYANNFLLKKNYAVEATPGNLKQLELQKKRAKQER
  Newman          MKVIFTQDV--KGKGKKGEVKEVPVGYANNFLLKKNYAVEATPGNLKQLELQKKRAKQER
  USA300_FPR3757  MKVIFTQDV--KGKGKKGEVKEVPVGYANNFLLKKNYAVEATPGNLKQLELQKKRAKQER
                  *********  *************************************************
  
  COL             QQEIEDAKALKETLSNIEVEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP
  N315            QQEIEDAKALKETLSNIEVEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP
  NCTC8325        QQEIEDAKALKETLSNIEVEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP
  Newman          QQEIEDAKALKETLSNIEVEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP
  USA300_FPR3757  QQEIEDAKALKETLSNIEVEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP
                  ************************************************************
  
  COL             NGIHSLGYTNVPVKLDKEVEGTIRVHTVEQ
  N315            NGIHSLGYTNVPVKLDKEVEGTIRVHTVEQ
  NCTC8325        NGIHSLGYTNVPVKLDKEVEGTIRVHTVEQ
  Newman          NGIHSLGYTNVPVKLDKEVEGTIRVHTVEQ
  USA300_FPR3757  NGIHSLGYTNVPVKLDKEVEGTIRVHTVEQ
                  ******************************