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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000023000
- symbol?: —
- synonym:
- description?: membrane protein
- membrane protein
- YybS family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 23273..24268
- synteny block?: BlockID0000200
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0013
08BA02176:
C248_0013
11819-97:
MS7_0013
6850:
RSAU_000013
71193:
ST398NM01_0013
ECT-R 2:
ECTR2_13
ED133:
SAOV_0013
ED98:
SAAV_0015
HO 5096 0412:
SAEMRSA15_00130
JH1:
SaurJH1_0013
JH9:
SaurJH9_0013
JKD6008:
SAA6008_00013
JKD6159:
SAA6159_00013
LGA251:
SARLGA251_00130
M013:
M013TW_0014
MRSA252:
SAR0013
MSHR1132:
SAMSHR1132_00130
MSSA476:
SAS0013
Mu3:
SAHV_0013
Mu50:
SAV0013
MW2:
MW0013
RF122:
SAB0013
ST398:
SAPIG0013
T0131:
SAT0131_00015 (aroC)
TCH60:
HMPREF0772_10455
TW20:
SATW20_00130
USA300_TCH1516:
USA300HOU_0013
VC40:
SAVC_00065
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ------------------------MFSKIQPKATIIATIALVFVALALYLVPGLGLIFAL
N315 MYKLLISIKEVKIIAIVKNMGVAYVFSKIQPKATIIATITLVFVALALYLVPGLGLIFAL
NCTC8325 -------------------MGVAYVFSKIQPKATIIATIALVFVALALYLVPGLGLIFAL
Newman ---MLIFIKEVKIIAIVKNMGVAYVFSKIQPKATIIATIALVFVALALYLVPGLGLIFAL
USA300_FPR3757 -------------------MGVAYVFSKIQPKATIIATIALVFVALALYLVPGLGLIFAL
:**************:********************
COL FATIPGIVLWNKSIQSFGISALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSK
N315 FATIPGIVLWNKSIQSFGVSALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSK
NCTC8325 FATIPGIVLWNKSIQSFGISALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSK
Newman FATIPGIVLWNKSIQSFGISALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSK
USA300_FPR3757 FATIPGIVLWNKSIQSFGISALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSK
******************:*****************************************
COL ERILYVTTVAMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQILE
N315 ERMLYVTTVAMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQILE
NCTC8325 ERILYVTTVAMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQILE
Newman ERILYVTTVAMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQILE
USA300_FPR3757 ERILYVTTVAMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQILE
**:*********************************************************
COL EGFRQATVQLPGFIIIITFLIVLINLIVTFPILRKFKIATPVFKPLFAWQMSGILLWIYI
N315 EGFRQATVQLPGFIIIITFLIVLINLIVTFPVLRKFKIATPVFKPLFAWQMSGILLWIYI
NCTC8325 EGFRQATVQLPGFIIIITFLIVLINLIVTFPILRKFKIATPVFKPLFAWQMSGILLWIYI
Newman EGFRQATVQLPGFIIIITFLIVLINLIVTFPILRKFKIATPVFKPLFAWQMSGILLWIYI
USA300_FPR3757 EGFRQATVQLPGFIIIITFLIVLINLIVTFPILRKFKIATPVFKPLFAWQMSGILLWIYI
*******************************:****************************
COL IVIICLLFTGQPSVFQSILLNFQLVLSLVMYIQGLSVIHFFGKAKGLPNAVTILLLVIGT
N315 IVIICLLFTGQPSVFQSILLNFQLVLSLVMYIQGLSVIHFFGKAKGLPNAVTILLLIIGT
NCTC8325 IVIICLLFTGQPSVFQSILLNFQLVLSLVMYIQGLSVIHFFGKAKGLPNAVTILLLVIGT
Newman IVIICLLFTGQPSVFQSILLNFQLVLSLVMYIQGLSVIHFFGKAKGLPNAVTILLLVIGT
USA300_FPR3757 IVIICLLFTGQPSVFQSILLNFQLVLSLVMYIQGLSVIHFFGKAKGLPNAVTILLLVIGT
********************************************************:***
COL ILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK
N315 ILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK
NCTC8325 ILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK
Newman ILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK
USA300_FPR3757 ILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK
*******************************