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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000011000
- symbol?: gyrB
- synonym:
- description?: DNA gyrase subunit B
- DNA gyrase subunit B
- DNA gyrase, B subunit
- DNA gyrase B subunit
- DNA topoisomerase (ATP-hydrolyzing) subunit B
- DNA topoisomerase (ATP-hydrolyzing) subunit B, GyrB
- DNA topoisomerase subunit B
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 10879..12813
- synteny block?: BlockID0000080
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0005 (gyrB)
08BA02176:
C248_0005 (gyrB)
11819-97:
MS7_0005 (gyrB)
6850:
RSAU_000005 (gyrB)
71193:
ST398NM01_0005
ECT-R 2:
ECTR2_5 (gyrB)
ED133:
SAOV_0005 (gyrB)
ED98:
SAAV_0005 (gyrB)
HO 5096 0412:
SAEMRSA15_00050 (gyrB)
JH1:
SaurJH1_0005
JH9:
SaurJH9_0005
JKD6008:
SAA6008_00005 (gyrB)
JKD6159:
SAA6159_00005 (gyrB)
LGA251:
SARLGA251_00050 (gyrB)
M013:
M013TW_0006
MRSA252:
SAR0005 (gyrB)
MSHR1132:
SAMSHR1132_00050
MSSA476:
SAS0005
Mu3:
SAHV_0005 (gyrB)
Mu50:
SAV0005 (gyrB)
MW2:
MW0005 (gyrB)
RF122:
SAB0005 (gyrB)
ST398:
SAPIG0005 (gyrB)
T0131:
SAT0131_00005
TCH60:
HMPREF0772_10463 (gyrB)
TW20:
SATW20_00050 (gyrB)
USA300_TCH1516:
USA300HOU_0005 (gyrB)
VC40:
SAVC_00025 (gyrB)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MVTALSDVNNTDNYGAGQIQVLEGLEAARKRPGMYIGSTSERGLHHLVWEIVDNSIDEAL
N315 MVTALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEAL
NCTC8325 MVTALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEAL
Newman MVTALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEAL
USA300_FPR3757 MVTALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEAL
***************************.********************************
COL AGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS
N315 AGYANKIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS
NCTC8325 AGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS
Newman AGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS
USA300_FPR3757 AGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS
*****:******************************************************
COL GGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKAD
N315 GGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKAD
NCTC8325 GGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKAD
Newman GGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKAD
USA300_FPR3757 GGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKAD
************************************************************
COL GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELL
N315 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELL
NCTC8325 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELL
Newman GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELL
USA300_FPR3757 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELL
************************************************************
COL NENKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRAL
N315 NENKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRAL
NCTC8325 NENKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRAL
Newman NENKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRAL
USA300_FPR3757 NENKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRAL
************************************************************
COL TRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVV
N315 TRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVV
NCTC8325 TRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVV
Newman TRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVV
USA300_FPR3757 TRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVV
************************************************************
COL DKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLAD
N315 DKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLAD
NCTC8325 DKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLAD
Newman DKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLAD
USA300_FPR3757 DKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLAD
************************************************************
COL CSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQ
N315 CSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQ
NCTC8325 CSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQ
Newman CSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQ
USA300_FPR3757 CSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQ
************************************************************
COL MITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIA
N315 MITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIA
NCTC8325 MITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIA
Newman MITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIA
USA300_FPR3757 MITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIA
************************************************************
COL QPPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEH
N315 QPPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEH
NCTC8325 QPPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEH
Newman QPPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEH
USA300_FPR3757 QPPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEH
************************************************************
COL RALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDF
N315 RALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDF
NCTC8325 RALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDF
Newman RALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDF
USA300_FPR3757 RALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDF
********************************************