PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000010000
• symbol^?: recF
• synonym:
• description^?: recombination protein F

  descriptions from strain specific annotations:

  • recombination protein F
  • DNA replication and repair protein RecF
  • DNA replication/repair protein RecF
  • DNA replication and repair protein
  • DNA recombination and repair protein RecF
  • DNA repair and genetic recombination protein
  • DNA replication and repair RecF family protein
  • recF protein
• strand^?: +
• coordinates^?: 9757..10869
• synteny block^?: BlockID0000070
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0004 (recF)
N315:
SA0004 (recF)
NCTC8325:
SAOUHSC_00004 (recF)
Newman:
NWMN_0003 (recF)
USA300_FPR3757:
SAUSA300_0004 (recF)
04-02981:
SA2981_0004 (recF)
08BA02176:
C248_0004 (recF)
11819-97:
MS7_0004 (recF)
6850:
RSAU_000004 (recF)
71193:
ST398NM01_0004
ECT-R 2:
ECTR2_4 (recF)
ED133:
SAOV_0004 (recF)
ED98:
SAAV_0004 (recF)
HO 5096 0412:
SAEMRSA15_00040 (recF)
JH1:
SaurJH1_0004 (recF)
JH9:
SaurJH9_0004 (recF)
JKD6008:
SAA6008_00004 (recF)
JKD6159:
SAA6159_00004 (recF)
LGA251:
SARLGA251_00040 (recF)
M013:
M013TW_0005
MRSA252:
SAR0004 (recF)
MSHR1132:
SAMSHR1132_00040
MSSA476:
SAS0004 (recF)
Mu3:
SAHV_0004 (recF)
Mu50:
SAV0004 (recF)
MW2:
MW0004 (recF)
RF122:
SAB0004 (recF)
ST398:
SAPIG0004
T0131:
SAT0131_00004
TCH60:
HMPREF0772_10464 (recF)
TW20:
SATW20_00040 (recF)
USA300_TCH1516:
USA300HOU_0004 (recF)
VC40:
SAVC_00020 (recF)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL
  N315            MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL
  NCTC8325        MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL
  Newman          MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL
  USA300_FPR3757  MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL
                  ************************************************************
  
  COL             IRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPED
  N315            IRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPED
  NCTC8325        IRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPED
  Newman          IRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPED
  USA300_FPR3757  IRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPED
                  ************************************************************
  
  COL             LNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEV
  N315            LNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEV
  NCTC8325        LNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEV
  Newman          LNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEV
  USA300_FPR3757  LNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEV
                  ************************************************************
  
  COL             LNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
  N315            LNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
  NCTC8325        LNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
  Newman          LNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
  USA300_FPR3757  LNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
                  ************************************************************
  
  COL             LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEI
  N315            LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEI
  NCTC8325        LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEI
  Newman          LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEI
  USA300_FPR3757  LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEI
                  ************************************************************
  
  COL             ELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKL
  N315            ELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKL
  NCTC8325        ELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKL
  Newman          ELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKL
  USA300_FPR3757  ELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNPKL
                  *********************************************************.**
  
  COL             YRINQGEIIK
  N315            YRINQGEIIK
  NCTC8325        YRINQGEIIK
  Newman          YRINQGEIIK
  USA300_FPR3757  YRINQGEIIK
                  **********