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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000007000
- symbol?: dnaN
- synonym:
- description?: DNA polymerase III subunit beta
- DNA polymerase III subunit beta
- DNA polymerase III, beta subunit
- DNA-directed DNA polymerase beta subunit
- DNA-directed DNA polymerase beta subunit, DnaN
- DNA-directed DNA polymerase III subunit beta
- DNA polymerase III beta subunit
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 7253..8386
- synteny block?: BlockID0000040
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0002 (dnaN)
08BA02176:
C248_0002 (dnaN)
11819-97:
MS7_0002 (dnaN)
6850:
RSAU_000002 (dnaN)
71193:
ST398NM01_0002
ECT-R 2:
ECTR2_2 (dnaN)
ED133:
SAOV_0002 (dnaN)
ED98:
SAAV_0002 (dnaN)
HO 5096 0412:
SAEMRSA15_00020 (dnaN)
JH1:
SaurJH1_0002
JH9:
SaurJH9_0002
JKD6008:
SAA6008_00002 (dnaN)
JKD6159:
SAA6159_00002 (dnaN)
LGA251:
SARLGA251_00020 (dnaN)
M013:
M013TW_0002
MRSA252:
SAR0002 (dnaN)
MSHR1132:
SAMSHR1132_00020
MSSA476:
SAS0002
Mu3:
SAHV_0002 (dnaN)
Mu50:
SAV0002 (dnaN)
MW2:
MW0002 (dnaN)
RF122:
SAB0002 (dnaN)
ST398:
SAPIG0002 (dnaN)
T0131:
SAT0131_00002
TCH60:
HMPREF0772_10466 (dnaN)
TW20:
SATW20_00020 (dnaN)
USA300_TCH1516:
USA300HOU_0002 (dnaN)
VC40:
SAVC_00010
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPK
N315 MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPK
NCTC8325 MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPK
Newman MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPK
USA300_FPR3757 MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPK
************************************************************
COL TVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLD
N315 TVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLD
NCTC8325 TVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLD
Newman TVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLD
USA300_FPR3757 TVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLD
************************************************************
COL PDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTAT
N315 PDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTAT
NCTC8325 PDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTAT
Newman PDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTAT
USA300_FPR3757 PDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTAT
************************************************************
COL DSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNF
N315 DSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNF
NCTC8325 DSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNF
Newman DSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNF
USA300_FPR3757 DSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNF
************************************************************
COL ISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVE
N315 ISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVE
NCTC8325 ISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVE
Newman ISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVE
USA300_FPR3757 ISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVE
************************************************************
COL LSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILK
N315 LSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILK
NCTC8325 LSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILK
Newman LSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILK
USA300_FPR3757 LSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILK
************************************************************
COL PKGDDSVTQLILPIRTY
N315 PKGDDSVTQLILPIRTY
NCTC8325 PKGDDSVTQLILPIRTY
Newman PKGDDSVTQLILPIRTY
USA300_FPR3757 PKGDDSVTQLILPIRTY
*****************