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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01945
  • pan locus tag?: SAUPAN004572000
  • symbol: SAOUHSC_01945
  • pan gene symbol?: epiG
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_01945
  • symbol: SAOUHSC_01945
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1849365..1850063
  • length: 699
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGATAATTAACGAATTAAAGTCATGTAAGTTGAAATTTTCTAAGCAAGCGCTCACATTT
    GTACCCATTATTGTAACCATATTGTTTATATTATTTATAAATTGGTATTTAAACGTAAAT
    TTATGGAATGGTCGACAAATAAGTTTGTTTACAGCGAGTTTTAATGCAATTACATCGCTA
    TTAATTTCTATAAACGTCTATCAAGTTATCAATTTTGAAGAAAATATTGGTCACTTTAAT
    CATATTTTAGGAAAAGCTAATAGGCTAAATTGGTTAAATGCATCAATGATTTTTACTTAT
    ACTATTACAGCCATATGTATTCTATTAGCATCAATTAATTTATTGTGGCATTCACATGAT
    ATGAAAATAACACTTATGTTTATAGGCGTATCATTGTTTTTCAATGTAATTATATTACTG
    CTACTTTTTATTTTTAGTATTTTCATTAAAGATGTAATGGCTATTGTTGTCGGAGTTTTA
    ATGTTTATTTTTAACGTTTATTTTGGATTAGAAGTGCTTGGAGATCATTCGTGGTTCTAT
    TTACCAATCACATATGCTACACGTTACGTTTATATGTTTATCGAAGGGAGTATACCAGTT
    ACATTAACATTGGCAATCTATATTATTATCACGTTGCTATTAGCAGTTTTACTCTTTAAA
    GGATTTAATAAATGGAGCGGTAGAACAATTAAAGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    699

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_01945
  • symbol: SAOUHSC_01945
  • description: hypothetical protein
  • length: 232
  • theoretical pI: 9.50209
  • theoretical MW: 26774.1
  • GRAVY: 1.02026

⊟Function[edit | edit source]

  • TIGRFAM:
    lantibiotic protection ABC transporter permease subunit, MutG family (TIGR03733; HMM-score: 37.5)
  • TheSEED  :
    • BsaG protein
  • PFAM:
    no clan defined DUF3917; Protein of unknown function (DUF3917) (PF13055; HMM-score: 9.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0009
    • Cytoplasmic Membrane Score: 0.9946
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0045
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00129
    • TAT(Tat/SPI): 0.000092
    • LIPO(Sec/SPII): 0.00298
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIINELKSCKLKFSKQALTFVPIIVTILFILFINWYLNVNLWNGRQISLFTASFNAITSLLISINVYQVINFEENIGHFNHILGKANRLNWLNASMIFTYTITAICILLASINLLWHSHDMKITLMFIGVSLFFNVIILLLLFIFSIFIKDVMAIVVGVLMFIFNVYFGLEVLGDHSWFYLPITYATRYVYMFIEGSIPVTLTLAIYIIITLLLAVLLFKGFNKWSGRTIKD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: SigB* (activation) regulon
    SigB*(sigma factor)controlling a large regulon involved in stress/starvation response and adaptation;  [1]   other strains

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 1.2 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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