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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS11370 [old locus tag: SACOL2163 ]
  • pan locus tag?: SAUPAN005562000
  • symbol: SACOL_RS11370
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS11370 [old locus tag: SACOL2163 ]
  • symbol: SACOL_RS11370
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2241857..2242117
  • length: 261
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2241857..2242117) NCBI
  • BioCyc: SACOL_RS11370 BioCyc
  • MicrobesOnline: see SACOL2163

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGGCAATGACAGTAAAAAAGGATAATAATGAAGTGCGTATTCAATGGAGAGTTGCTGAT
    ATCAAAATTCCTACAAGTGAAATTAAAAATATTACACAAGACCAAGATATTCATGCAGTT
    CCTAAATTAGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGC
    GTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTT
    TACAATGAATTAACTAAATAA
    60
    120
    180
    240
    261

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS11370 [old locus tag: SACOL2163 ]
  • symbol: SACOL_RS11370
  • description: hypothetical protein
  • length: 86
  • theoretical pI: 6.52717
  • theoretical MW: 10006.2
  • GRAVY: -0.768605

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL2163
  • ⊞PFAM:
    PH (CL0266) bPH_8; SunI-like bacterial PH domain (PF23491; HMM-score: 90.6)
    and 2 more
    bPH_5; Bacterial PH domain (PF10882; HMM-score: 20.7)
    no clan defined FmdE; FmdE, Molybdenum formylmethanofuran dehydrogenase operon (PF02663; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.3248
    • Cytoplasmic Membrane Score: 0.3219
    • Cell wall & surface Score: 0.0015
    • Extracellular Score: 0.3517
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005408
    • TAT(Tat/SPI): 0.000282
    • LIPO(Sec/SPII): 0.001307
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAMTVKKDNNEVRIQWRVADIKIPTSEIKNITQDQDIHAVPKLDSKDVSRIGSTFGKTNRVIIDTEDHEYIIYTQNDQKVYNELTK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2163
  • protein localization: see SACOL2163
  • quantitative data / protein copy number per cell: see SACOL2163
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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