From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10755 [old locus tag: SACOL2055 ]
  • pan locus tag?: SAUPAN005334000
  • symbol: SACOL_RS10755
  • pan gene symbol?: rsbW
  • synonym:
  • product: anti-sigma B factor RsbW

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS10755 [old locus tag: SACOL2055 ]
  • symbol: SACOL_RS10755
  • product: anti-sigma B factor RsbW
  • replicon: chromosome
  • strand: -
  • coordinates: 2121937..2122446
  • length: 510
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2121937..2122446) NCBI
  • BioCyc: SACOL_RS10755 BioCyc
  • MicrobesOnline: see SACOL2055

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGTTAATGAAGGAACGGAGGTCGAATAACATGCAATCTAAAGAAGATTTTATCGAAATG
    CGCGTGCCAGCATCGGCAGAGTATGTAAGTTTAATTCGTTTAACACTTTCTGGCGTTTTT
    TCGAGAGCTGGTGCTACATATGATGATATTGAAGATGCCAAGATTGCAGTTAGTGAAGCT
    GTGACAAATGCAGTTAAACATGCATACAAAGAAAATAACAATGTGGGCATTATTAACATA
    TATTTTGAAATTTTAGAAGATAAAATTAAAATTGTTATTTCTGATAAAGGTGACAGTTTT
    GATTATGAAACAACTAAATCAAAAATAGGTCCTTACGATAAAGACGAAAATATAGACTTT
    TTACGCGAAGGTGGCCTAGGTTTATTTTTAATCGAATCTTTAATGGATGAAGTCACAGTA
    TATAAAGAATCTGGTGTGACAATCAGTATGACTAAGTATATAAAAAAAGAGCAGGTGCGA
    AATAATGGCGAAAGAGTCGAAATCAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    510

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS10755 [old locus tag: SACOL2055 ]
  • symbol: SACOL_RS10755
  • description: anti-sigma B factor RsbW
  • length: 169
  • theoretical pI: 4.63512
  • theoretical MW: 19181.6
  • GRAVY: -0.388166

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.11.1?  ExPASy
    Non-specific serine/threonine protein kinase ATP + a protein = ADP + a phosphoprotein
  • TIGRFAM:
    anti-sigma B factor (TIGR01924; EC 2.7.11.1; HMM-score: 271.9)
    and 2 more
    Cellular processes Cellular processes Sporulation and germination anti-sigma F factor (TIGR01925; EC 2.7.11.1; HMM-score: 63.5)
    Signal transduction Regulatory functions Protein interactions anti-sigma F factor (TIGR01925; EC 2.7.11.1; HMM-score: 63.5)
  • TheSEED: see SACOL2055
  • PFAM:
    His_Kinase_A (CL0025) HATPase_c_2; Histidine kinase-like ATPase domain (PF13581; HMM-score: 94.4)
    and 1 more
    HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518; HMM-score: 26)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.047582
    • TAT(Tat/SPI): 0.05241
    • LIPO(Sec/SPII): 0.002121
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLMKERRSNNMQSKEDFIEMRVPASAEYVSLIRLTLSGVFSRAGATYDDIEDAKIAVSEAVTNAVKHAYKENNNVGIINIYFEILEDKIKIVISDKGDSFDYETTKSKIGPYDKDENIDFLREGGLGLFLIESLMDEVTVYKESGVTISMTKYIKKEQVRNNGERVEIS

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2055
  • protein localization: see SACOL2055
  • quantitative data / protein copy number per cell: see SACOL2055
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS10755&oldid=89856"