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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS09060 [old locus tag: SACOL1771 ]
  • pan locus tag?: SAUPAN004376000
  • symbol: SACOL_RS09060
  • pan gene symbol?: —
  • synonym:
  • product: peroxiredoxin

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS09060 [old locus tag: SACOL1771 ]
  • symbol: SACOL_RS09060
  • product: peroxiredoxin
  • replicon: chromosome
  • strand: +
  • coordinates: 1810177..1810623
  • length: 447
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1810177..1810623) NCBI
  • BioCyc: SACOL_RS09060 BioCyc
  • MicrobesOnline: see SACOL1771

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    TTGCATCAACATGACTTTAAAGTCCAAACTTCTTGGCAAGGTGGTCGTAACAATGTCGGA
    AACGTTCAAGGCGACATACTTTCAGAGAATATTTCTATACCTGCTTCTTTAGGTGGTGTT
    GGTATAGGAACAAATCCCGATGAAATGTTAGTATCAGCCGCTTCATCATGTTATATCATC
    TCATTAGCAGCTACTCTTGAACGTGCAAAGTTCACAGATATTTCAATTGAACAACAATCG
    ATTGGAACAGCTTGTTTAAATAACGGAAAATTCAGTATGTCAAAAATTGTGCACCATCCT
    CAAATTCAAATTCCAAGTGATCAAATAGCACAATTAGAAAAGCGATTACCAAAATTGATA
    ACAATTGCAGATAATAATTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAA
    ATCTATCCCATCATTCAGGCCAAATAA
    60
    120
    180
    240
    300
    360
    420
    447

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS09060 [old locus tag: SACOL1771 ]
  • symbol: SACOL_RS09060
  • description: peroxiredoxin
  • length: 148
  • theoretical pI: 7.50798
  • theoretical MW: 16070.3
  • GRAVY: -0.107432

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    peroxiredoxin, SACOL1771 subfamily (TIGR03563; HMM-score: 203.3)
    and 2 more
    Cellular processes Cellular processes Detoxification peroxiredoxin, Ohr subfamily (TIGR03561; HMM-score: 47.6)
    Cellular processes Cellular processes Detoxification peroxiredoxin, OsmC subfamily (TIGR03562; HMM-score: 37.1)
  • TheSEED: see SACOL1771
  • ⊞PFAM:
    no clan defined OsmC; OsmC-like protein (PF02566; HMM-score: 55.8)
    and 1 more
    MadL; Malonate transporter MadL subunit (PF03817; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9709
    • Cytoplasmic Membrane Score: 0.0058
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.023
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.052031
    • TAT(Tat/SPI): 0.004726
    • LIPO(Sec/SPII): 0.003716
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHQHDFKVQTSWQGGRNNVGNVQGDILSENISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGTACLNNGKFSMSKIVHHPQIQIPSDQIAQLEKRLPKLITIADNNCMISNAVRNNVDIKIYPIIQAK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1771
  • protein localization: see SACOL1771
  • quantitative data / protein copy number per cell: see SACOL1771
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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