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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08540 [old locus tag: SACOL1674 ]
  • pan locus tag?: SAUPAN004217000
  • symbol: SACOL_RS08540
  • pan gene symbol?: recD2
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08540 [old locus tag: SACOL1674 ]
  • symbol: SACOL_RS08540
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1702192..1704669
  • length: 2478
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1702192..1704669) NCBI
  • BioCyc: SACOL_RS08540 BioCyc
  • MicrobesOnline: see SACOL1674

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    ATGTCAGACCCTACACTATTTGATTATTCAATGATCAAAGGTACTGTTGAAGCGATATTG
    TTTCAAAACAGTGATAATTTTTATACAGTGCTTAAAGTAGATACTATTGAAACAAATGAA
    GACTTTGATACAATGCCAACTGTTGTAGGGTTTCTTCCGAATATTGTTGAAGGCGATGTC
    TACACATTTAAAGGGCAAGTTGTTGATCATCCACGTTATGGTAAACAATTAAAAGCAGAG
    ACTTTTGAAAAAGAAATGCCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGAT
    TTGTTTAAAGGTGTAGGTAAAAAGACAGCTCAAAATATTGTTAATACATTAGGTGACAAT
    GCGATAAATGATATATTAGATGACCATTCAGTGCTAGAAAAAGTTTCGGGATTATCTAAA
    AAGAAACAGAAACAAATTGCAGAACAAATTTCAGCAAATCAAGAATCTGAAAAAATAATG
    ATTCGTTTACATGATTTAGGGTTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTAT
    CTCGGCGATACACTGACTATTTTAGATCGAAATCCATATCAATTGATTTATGATATTAAA
    GGTATTGGTTTTAATAAAGCAGATCAACTTGCTAGAAATATTGGTATCGCTTATAACGAT
    AATGAACGATTAAAAGCTGCGTTGCTCTATACGTTAGAAGAAGAATGTATTAAACAGGGA
    CATACATATTTGCCTATCAATGTTGTTATAGATTTAACGGTTGATGTATTAAATTATCAA
    GATGAAGAGGTCATCGAACCTGAAAAATTAGACGAAATGTTGCAATACTTAAATGAGGAA
    AAACGACTAATTATTGACAATGAACAAGTTGCAATTCCAAGTTTGTATTATTCTGAAATC
    AAAAGTGTTCAAAACTTATTCAGAATAAAGACGCATACAAATAAACTTACAGAAATTGAA
    CAGTCAGATTTACAAATGCATATTGGTGAAATAGAAGATGCGAATCAAGTGAACTATGCA
    GCTTCACAAAAAGAAGCTTTGCAAACGGCTATCAATTCTAAGGTGATGCTATTAACCGGT
    GGACCGGGAACAGGAAAAACGACAGTAATTAAAGGTATTGTTGAATTATATGCTGAGATT
    CATGGCTTATCATTAGATTATGATGATTATGTCAATGATGATTATCCAGTTGTATTAGCA
    GCGCCAACAGGAAGAGCGTCTAAGAGACTACAAGAGTCAACTGGATTAGAAGCAATGACG
    ATTCATCGTTTAATAGGTTGGAATCAAGACACAAAGCCAGAGGATATATTAGAAAATGAA
    ATAAACGCACGACTCATAATCATTGATGAGATGTCTATGGTAGATACTTGGTTGTTCCAC
    CAATTTTTAAGTGCAGTTCCTTTAGATGCACAATTGATATTTGTAGGTGATGAGGACCAA
    TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGAATCGAAAGCTATACCA
    CGAGTAAATCTGACTGAAGTATATCGTCAACAAGATGGTTCAAGCATTATAGAATTAGCA
    CATCGAATGAAGTTGGGTCAGAAAATTGATATTACACAGCGTTTTCATGATAGAAGTTTT
    ATTAACTGTCAGGCAAACCAAATACCAACAGTTGTTGAGAAGGTAGTTACTAGTGCTGTT
    AATAAAGGGTATACTATGGCTGATATTCAAGTGCTTGCACCAATGTATAAAGGAAATGCC
    GGTATTAAACGTTTAAATCAAGTTTTACAAGATATTTTAAACCCTAAAAAGAAAGACACA
    CGAGAAATTGAGTTTGGTGATGTAGTCTTTAGAAAAGGTGACAAAGTATTACAACTTGTT
    AATAGGCCAAATGATAACATATTCAATGGTGACATAGGAGTTATTGTTGGTATTTTTTGG
    GCGAAAGAAAATGCCCTTAATAAAGATGTACTTGTTGTGGATTTTGAAGGTAATGAAATT
    ACATTTACGAAACAAGATATGATGGAATTAACACATGCTTATTGTACATCAATCCATAAA
    TCACAAGGTTCAGAATTTCCTATTGTTATCATGCCTATTGTTAAACAGTATTTTAGAATG
    TTACAAAGACCGATATTATATACTGGTTTAACTAGAGCGAAAACGAGTTTAGTTTTACTT
    GGTGATCCGGAAGCATTTGATATTGGATTGAAAACAAATGGTCAAGCGCGTTTAACACAA
    TTATGTACATTGTTGAAAAATTATTTTAATTCAGAAGATGAAGAAATGCTGGAAAACACA
    GCAACTAATGATACAGGAGCTTCACAAACGACAATAGATGATCAAGTAGAAGCGCCAATG
    TCATCGAATGATAGTGAAGAAGTTATGTCTGATTCAACAAAAACAGATACAAATGTATTA
    ACGGAAGCTACAATGTTTAAAATTGACCCAATGATTAATATGGGAGAAATCACGCCGTAT
    GACTTTATAGAACGTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2478

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS08540 [old locus tag: SACOL1674 ]
  • symbol: SACOL_RS08540
  • description: hypothetical protein
  • length: 825
  • theoretical pI: 4.48109
  • theoretical MW: 93048.2
  • GRAVY: -0.29103

⊟Function[edit | edit source]

  • reaction:
    EC 3.6.4.12?  ExPASy
    DNA helicase ATP + H2O = ADP + phosphate
  • TIGRFAM:
    Unknown function Enzymes of unknown specificity helicase, RecD/TraA family (TIGR01448; HMM-score: 1111.8)
    and 12 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair exodeoxyribonuclease V, alpha subunit (TIGR01447; EC 3.1.11.5; HMM-score: 229.4)
    Ti-type conjugative transfer relaxase TraA (TIGR02768; HMM-score: 101.5)
    conjugative transfer relaxase protein TraI (TIGR02760; EC 3.6.4.12; HMM-score: 29.4)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair Holliday junction DNA helicase RuvA (TIGR00084; EC 3.6.4.12; HMM-score: 28.6)
    Cellular processes Cellular processes Sporulation and germination stage V sporulation protein K (TIGR02881; HMM-score: 25.2)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion AAA-ATPase EccA (TIGR03922; HMM-score: 21.1)
    P-type DNA transfer ATPase VirB11 (TIGR02788; HMM-score: 16.2)
    Cellular processes Cellular processes Conjugation P-type conjugative transfer ATPase TrbB (TIGR02782; HMM-score: 12.6)
    CbbX protein (TIGR02880; HMM-score: 12.3)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA threonylcarbamoyl adenosine modification protein YjeE (TIGR00150; HMM-score: 12.1)
    helicase/secretion neighborhood ATPase (TIGR03819; HMM-score: 11.2)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking signal recognition particle-docking protein FtsY (TIGR00064; HMM-score: 10.6)
  • TheSEED: see SACOL1674
  • PFAM:
    P-loop_NTPase (CL0023) AAA_30; AAA domain (PF13604; HMM-score: 170.9)
    AAA_19; AAA domain (PF13245; HMM-score: 153.5)
    and 34 more
    HHH (CL0198) HHH_RecD2; ATP-dependent RecD2 DNA helicase HHH domain (PF14490; HMM-score: 109.1)
    OB (CL0021) OB_YrrC; ATP-dependent DNA helicase YrrC, OB-fold domain (PF23139; HMM-score: 83.9)
    SH3 (CL0010) SH3_13; ATP-dependent RecD-like DNA helicase SH3 domain (PF18335; HMM-score: 74.5)
    P-loop_NTPase (CL0023) UvrD_C_2; UvrD-like helicase C-terminal domain (PF13538; HMM-score: 62)
    Viral_helicase1; Viral (Superfamily 1) RNA helicase (PF01443; HMM-score: 34.6)
    AAA_11; AAA domain (PF13086; HMM-score: 30.6)
    HHH (CL0198) HHH_5; Helix-hairpin-helix domain (PF14520; HMM-score: 20.3)
    P-loop_NTPase (CL0023) AAA_22; AAA domain (PF13401; HMM-score: 19.4)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 18.6)
    AAA_12; AAA domain (PF13087; HMM-score: 17.1)
    AAA_18; AAA domain (PF13238; HMM-score: 17)
    nSTAND3; Novel STAND NTPase 3 (PF20720; HMM-score: 16.1)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 15.3)
    AAA_14; AAA domain (PF13173; HMM-score: 15.3)
    ABC_tran; ABC transporter (PF00005; HMM-score: 14.9)
    Rad17; Rad17 P-loop domain (PF03215; HMM-score: 14.9)
    Mg_chelatase; Magnesium chelatase, subunit ChlI (PF01078; HMM-score: 14.5)
    AAA_28; AAA domain (PF13521; HMM-score: 14.5)
    PIF1; PIF1-like helicase (PF05970; HMM-score: 14.4)
    NPHP3_N; Nephrocystin 3, N-terminal (PF24883; HMM-score: 14.4)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 14)
    sPC4_like (CL0609) T4_y05I_C; y05I-like putative transcription factor C-terminal domain (PF24448; HMM-score: 13.8)
    P-loop_NTPase (CL0023) UvrD-helicase; UvrD/REP helicase N-terminal domain (PF00580; HMM-score: 13.5)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 13.5)
    T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 13.3)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 13.3)
    HHH (CL0198) HHH_3; Helix-hairpin-helix motif (PF12836; HMM-score: 13.2)
    P-loop_NTPase (CL0023) DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 12.8)
    NB-ARC; NB-ARC domain (PF00931; HMM-score: 12.6)
    Zeta_toxin; Zeta toxin (PF06414; HMM-score: 12.2)
    NACHT; NACHT domain (PF05729; HMM-score: 12.1)
    NTPase_1; NTPase (PF03266; HMM-score: 10.9)
    AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 10.4)
    AAA_17; AAA domain (PF13207; HMM-score: 8.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9838
    • Cytoplasmic Membrane Score: 0.0128
    • Cell wall & surface Score: 0.0012
    • Extracellular Score: 0.0022
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003329
    • TAT(Tat/SPI): 0.000112
    • LIPO(Sec/SPII): 0.000308
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIMIRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLLGDPEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEEMLENTATNDTGASQTTIDDQVEAPMSSNDSEEVMSDSTKTDTNVLTEATMFKIDPMINMGEITPYDFIER

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1674
  • protein localization: see SACOL1674
  • quantitative data / protein copy number per cell: see SACOL1674
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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