From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08110 [old locus tag: SACOL1592 ]
  • pan locus tag?: SAUPAN004111000
  • symbol: SACOL_RS08110
  • pan gene symbol?: —
  • synonym:
  • product: rhodanese

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08110 [old locus tag: SACOL1592 ]
  • symbol: SACOL_RS08110
  • product: rhodanese
  • replicon: chromosome
  • strand: +
  • coordinates: 1625196..1625582
  • length: 387
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1625196..1625582) NCBI
  • BioCyc: SACOL_RS08110 BioCyc
  • MicrobesOnline: see SACOL1592

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAGTGCTAGTTTGTACATCGCAATAATTTTAGTTATAGCAATTATTGCTTATATGATT
    GTTCAACAAATTCTTAACAAGCGAGCTGTTAAAGAATTAGATCAAAATGAATTCCATAAT
    GGGATTAGAAAAGCTCAAGTCATCGATGTTAGAGAGAAAGTTGACTATGACTACGGTCAC
    ATTAATGGGTCTCGCAATATTCCTATGACAATGTTCAGGCAACGATTCCAAGGATTAAGA
    AAAGATCAACCGGTATACTTATGTGATGCCAATGGGATTGCTAGCTATAGAGCCGCTCGT
    ATTTTGAAAAAGAATGGATATACAGATATCTATATGTTAAAAGGCGGCTATAAAAAATGG
    ACTGGAAAAATAAAGTCTAAAAAATAG
    60
    120
    180
    240
    300
    360
    387


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS08110 [old locus tag: SACOL1592 ]
  • symbol: SACOL_RS08110
  • description: rhodanese
  • length: 128
  • theoretical pI: 10.4847
  • theoretical MW: 14803.3
  • GRAVY: -0.31875

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA 2-selenouridine synthase (TIGR03167; EC 2.9.1.-; HMM-score: 24.1)
    phage shock operon rhodanese PspE (TIGR02981; EC 2.8.1.1; HMM-score: 23.1)
    thiazole biosynthesis domain (TIGR04271; HMM-score: 20.8)
    and 1 more
    PQQ-dependent catabolism-associated CXXCW motif protein (TIGR03865; HMM-score: 14.9)
  • TheSEED: see SACOL1592
  • PFAM:
    Phosphatase (CL0031) Rhodanese; Rhodanese-like domain (PF00581; HMM-score: 74)
    and 1 more
    no clan defined FtsH_ext; FtsH Extracellular (PF06480; HMM-score: 20.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0005
    • Cytoplasmic Membrane Score: 0.9954
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.004
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.311086
    • TAT(Tat/SPI): 0.001625
    • LIPO(Sec/SPII): 0.009856
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSASLYIAIILVIAIIAYMIVQQILNKRAVKELDQNEFHNGIRKAQVIDVREKVDYDYGHINGSRNIPMTMFRQRFQGLRKDQPVYLCDANGIASYRAARILKKNGYTDIYMLKGGYKKWTGKIKSKK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1592
  • protein localization: see SACOL1592
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS08110&oldid=132998"