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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07935 [old locus tag: SACOL1557 ]
  • pan locus tag?: SAUPAN004067000
  • symbol: SACOL_RS07935
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07935 [old locus tag: SACOL1557 ]
  • symbol: SACOL_RS07935
  • product: membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1593474..1594454
  • length: 981
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1593474..1594454) NCBI
  • BioCyc: SACOL_RS07935 BioCyc
  • MicrobesOnline: see SACOL1557

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTTAAAGTTAAATCCTTACAAGATTGGATTTAGAACAATAAAAACAGCAGTGGGTATG
    ACTTTAGGTGTAATTATTAGTAAGCTGTTAGGTTTAGATAATTATGCTTCAAGCGCCATA
    TTAGTCGTATTATGTATTAAACATACAAAAGTACATTCGCTACAAGCGATTATTTCAAGA
    TTAGTATCATGTTTTTTAGTATTGTTTTTAGGTTCAGCAATATTTAGTTTATTAGGTCAG
    AGTCCAATTGTACTCGGTATTATCGTATTGTTATTTATACCATTAACTGTCGTATTAAAA
    GTACAAGAAGGTGTCATTACGAGTTGCGTTATATTACTTCATGTTTTTAATGCAAAATCA
    ATTGATGCACATTTAATTGTTAATGAAACATTATTACTGTTAATTGGACTAAGCATTGCA
    TTTACAATGAATTTAATGATGCCAAGTTTAGACAAACAACTAGACGAATACAAATGTAAA
    ATTGAGCAACAAATTGCTGATATTTTTAGTAAATATAGTTATATTTGTGAAAAATATGAA
    GATACCATTGCGATTGAATTTGAAGTGTTACTTTTAAATATTAAAAAGGCGAAGTCTATC
    GCGTTCCGAGATGTTAAAAATCATTTTGTTAGAAACGAAAATTCATACTATCATTATTTT
    GATATGCGAGAAGAGCAAGTGGAATTGTTAATGAGAATGAAACCGCTCATCGAAAGTATC
    TGTCATAAAGATCCGCTTTTAAATGATGTTGCGTCACTGCTGAAAGAAATTGGTCTAAAT
    GTGAATAGTAATGACTATACAGCAATGCGTTTACACAATTTGTATGAGACGCGTTTGAAA
    TTGGATGAACTGCCATTGCCAACAACACACAAAGCGCTTAACTCGAGAGCAAGTATTATT
    CAAATATTAAATGAATTAGAAGAATATTTACAAATCAAATCGCAATTTGGTTCATTGAAA
    ATGCATAGTGAAGTAGCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    981

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS07935 [old locus tag: SACOL1557 ]
  • symbol: SACOL_RS07935
  • description: membrane protein
  • length: 326
  • theoretical pI: 7.87526
  • theoretical MW: 36972.7
  • GRAVY: 0.371166

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL1557
  • PFAM:
    no clan defined ArAE_1_C; Putative aromatic acid exporter C-terminal domain (PF11728; HMM-score: 150.6)
    FUSC (CL0307) ArAE_1; Aromatic acid exporter family member 1 (PF06081; HMM-score: 146.9)
    and 4 more
    FUSC_2; Fusaric acid resistance protein-like (PF13515; HMM-score: 19.2)
    E-set (CL0159) K1; K1 glycoprotein (PF02960; HMM-score: 14.5)
    FUSC (CL0307) DUF2955; Protein of unknown function (DUF2955) (PF11168; HMM-score: 13.4)
    Peptidase_PA (CL0124) Peptidase_S76; Serine peptidase of plant viral polyprotein, P1 (PF13611; HMM-score: 10.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9993
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.030722
    • TAT(Tat/SPI): 0.000799
    • LIPO(Sec/SPII): 0.006908
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLKLNPYKIGFRTIKTAVGMTLGVIISKLLGLDNYASSAILVVLCIKHTKVHSLQAIISRLVSCFLVLFLGSAIFSLLGQSPIVLGIIVLLFIPLTVVLKVQEGVITSCVILLHVFNAKSIDAHLIVNETLLLLIGLSIAFTMNLMMPSLDKQLDEYKCKIEQQIADIFSKYSYICEKYEDTIAIEFEVLLLNIKKAKSIAFRDVKNHFVRNENSYYHYFDMREEQVELLMRMKPLIESICHKDPLLNDVASLLKEIGLNVNSNDYTAMRLHNLYETRLKLDELPLPTTHKALNSRASIIQILNELEEYLQIKSQFGSLKMHSEVA

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1557
  • protein localization: see SACOL1557
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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