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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07380 [old locus tag: SACOL1447 ]
  • pan locus tag?: SAUPAN003829000
  • symbol: SACOL_RS07380
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07380 [old locus tag: SACOL1447 ]
  • symbol: SACOL_RS07380
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1458302..1459111
  • length: 810
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1458302..1459111) NCBI
  • BioCyc: SACOL_RS07380 BioCyc
  • MicrobesOnline: see SACOL1447

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGTGTGGACTTAGAAGTATAACATTAGGTACAACAAATATAGAACAGACAAAACATTTC
    ATGGTTGACATATTAGGATTAAATTATGAAGAACTTCTTGAAAACTCAATTCGTTTCGGC
    GATGCAGATATAAGCCCAGGAACAAGACTTCAATTTATACAAGTTCCAAGTGAGCAATTA
    GAAGAATCTCACTTTGTGGGTATTGGATTACGTACACCAACTGACTCAGGTTTAGAGGAG
    TATGCGGAAATATTATCGAATAAGGATATTCCATTTACAACAGTTAAAGAATTAAATGGC
    AATAAATATTTCAGTCTCGAAGATAACAATGGTCATATTTTCTCAATATATTCAAACGAG
    AATAATTATGGCGTTGGTTTAGGTATGCCTTCTTTTGAGAGTGCGGTCAATCCGTTACAT
    CAAGTGCAAGGTTTAGGACCAGTGATTCTTAAAGTGAATCATGTAGATATTACAGGTCAA
    ATTTTAACAAATATATTCGGACTTGAAGTATTTGCAGAATACCAACCCTTCGACAATGCT
    GACTATCATGTCCAAGTATTCAAAGTTGGAACGGGTGGTCTAGGTGGCGAAATACATTTA
    ATGCCTGTAGAAACCGAAATGACAATGCCGGAATATGGCGCAGTCGATCAAGTTGAGTTT
    GAAACGAAAGATGCAGATTTCTTTAATCAAGCGAAATCGCGCTTAGATGAAGTGGAAATA
    CCATATCAAACGCTTGAGCAAGATGATATTGAATCAATTAGAATTACTGAAAACAGTGGA
    TTATCGTTTATATTCACTTTACAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    810


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS07380 [old locus tag: SACOL1447 ]
  • symbol: SACOL_RS07380
  • description: hypothetical protein
  • length: 269
  • theoretical pI: 4.08
  • theoretical MW: 30084.4
  • GRAVY: -0.235316

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Other 2,3-dihydroxybiphenyl 1,2-dioxygenase (TIGR03213; EC 1.13.11.39; HMM-score: 17)
    and 1 more
    3,4-dihydroxyphenylacetate 2,3-dioxygenase (TIGR02295; EC 1.13.11.15; HMM-score: 12.4)
  • TheSEED: see SACOL1447
  • PFAM:
    Glyoxalase (CL0104) Glyoxalase; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (PF00903; HMM-score: 24.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9915
    • Cytoplasmic Membrane Score: 0.0054
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.003
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002877
    • TAT(Tat/SPI): 0.000172
    • LIPO(Sec/SPII): 0.000312
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MCGLRSITLGTTNIEQTKHFMVDILGLNYEELLENSIRFGDADISPGTRLQFIQVPSEQLEESHFVGIGLRTPTDSGLEEYAEILSNKDIPFTTVKELNGNKYFSLEDNNGHIFSIYSNENNYGVGLGMPSFESAVNPLHQVQGLGPVILKVNHVDITGQILTNIFGLEVFAEYQPFDNADYHVQVFKVGTGGLGGEIHLMPVETEMTMPEYGAVDQVEFETKDADFFNQAKSRLDEVEIPYQTLEQDDIESIRITENSGLSFIFTLQK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1447
  • protein localization: see SACOL1447
  • quantitative data / protein copy number per cell: see SACOL1447
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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