PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus COL
• locus tag: SACOL_RS04880 [old locus tag: SACOL0952 ]
• pan locus tag^?: SAUPAN003050000
• symbol: SACOL_RS04880
• pan gene symbol^?: mnhD1
• synonym:
• product: Na+/H+ antiporter subunit D

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SACOL_RS04880 [old locus tag: SACOL0952 ]
• symbol: SACOL_RS04880
• product: Na+/H+ antiporter subunit D
• replicon: chromosome
• strand: -
• coordinates: 952912..954408
• length: 1497
• essential: unknown other strains

⊟Accession numbers

• Location: NC_002951 (952912..954408) NCBI
• BioCyc: SACOL_RS04880 BioCyc
• MicrobesOnline: see SACOL0952

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  ATGATTGAAAGTAATATGCTTGTGTTAACGCTAGTTATTCCAGTAATTACAGCCATATTA
  CTTGTCTTTATTGGAAAGCGTCCTATTATAAAGCGTTATGTCGCACTAGGCGGTACATTA
  TTAACCTTGGTCGCGGCAATTATCAATTTAGCAAATGTTGTTAAACATGGACCAATACGC
  GTAGAGCTAGGTTCATGGAAAGCACCATACAGTATTGTCTTTGTATTAGACATATTCAGT
  GCCCTACTAATAATTACTAGTATTATTATTACAGCTATTGTGATTTTATATTCAAGCCAA
  ACAATTGGTATTGAACGTGAAAGATATTATTATTATTTTTCAGTACTATTTATGTTAATA
  GGTATCATTGGTGCATTCACAACTGGTGACATTTTCAACCTATTCGTATTTTTCGAAGTA
  TTTTTAATGTCATCTTATTTCTTATTAGTAATTGGTTCTACAAAAATTCAACTACAAGAA
  ACAATAAAATATGTTCTTGTTAACGTTGTATCGTCATCCTTCTTCGTAATGGGTGTAGCG
  ATTTTATATTCAGTAGTAGGAACATTGAATCTAGCAGATATAAGCAATAAATTAGCTAAC
  CTTTCAGCGCATGACAGTGGCTTAGTCAATATCGTTTTCATACTATTTATCTTTGTTTTT
  GCTACAAAAGCTGGCGTATTCCCAATGTTTGTTTGGTTACCTAGTGCATACTATGCACCA
  CCAATTCCAATCATTGCATTCTTTGGTGCTTTGTTAACAAAAGTTGGTGTTTATGCAATC
  GCTAGAACATTGAGCCTATTCTTTAGTGATAATGTAAGCTTTTCACATTATGTCATTTTA
  TTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATT
  AAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCA
  ATGATGACAGAGTCAGGTATGATTGGGGCTATTTACTATACATTGCACGACATGTTAGTA
  AAACTTGCATTATTCTTGCTTATCGGAATTATGATTAAAATTACAGGCACTGCTGATTTA
  AGACAATTTGGTGGCTTAATTAAACGATATCCTGTACTTGGTTGGTCATTCTTTATCGCA
  GCATTAAGTTTAGCTGGCATTCCCCCACTCAGTGGCTTTTATGGAAAATTTTTTATTGTC
  CAATCAACATTTGAAAGAGGATTTTATTTAAGTGGTGTCATCGTCTTATTATCAAGTTTA
  GTCGTATTATATTCTGTCATTCGCATATTCCTACAAGGCTTTTTCGGTCAACCAAAAGGA
  TATGATCTTAATAACAAAGTCGACGTCAAATATTTAACTACGATTGCAATCGTTGCAGTT
  GTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGT
  GCAGAAACATTCTACAATCCATCAACCTACGTTAAAGCTGTATTAGGAGGTAAATAA
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  1497
  

⊟Protein

⊟General

• locus tag: SACOL_RS04880 [old locus tag: SACOL0952 ]
• symbol: SACOL_RS04880
• description: Na+/H+ antiporter subunit D
• length: 498
• theoretical pI: 9.71816
• theoretical MW: 54679.4
• GRAVY: 1.12791

⊟Function

• reaction:
  EC 1.6.5.3?  ExPASy
  NADH:ubiquinone reductase (H⁺-translocating) NADH + ubiquinone + 5 H⁺(In) = NAD⁺ + ubiquinol + 4 H⁺(Out)
• TIGRFAM:
  Metabolism Transport and binding proteins Cations and iron carrying compounds multicomponent K+:H+antiporter (TIGR00944; HMM-score: 762.6)
  and 5 more
  Metabolism Energy metabolism Electron transport proton-translocating NADH-quinone oxidoreductase, chain M (TIGR01972; HMM-score: 190.9)
  Metabolism Energy metabolism Electron transport proton-translocating NADH-quinone oxidoreductase, chain N (TIGR01770; HMM-score: 159.3)
  Metabolism Energy metabolism Electron transport proton-translocating NADH-quinone oxidoreductase, chain L (TIGR01974; EC 1.6.-.-; HMM-score: 111.4)
  Metabolism Transport and binding proteins Cations and iron carrying compounds monovalent cation:proton antiporter (TIGR00940; HMM-score: 92.4)
  NAD(P)H dehydrogenase, subunit NdhF3 family (TIGR01960; HMM-score: 73.7)
• TheSEED: see SACOL0952
• PFAM:
  ComplexI-N (CL0425) Proton_antipo_M; NADH:quinone oxidoreductase/Mrp antiporter, TM (PF00361; HMM-score: 174.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 14
• DeepLocPro: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 0.9994
  • Cell wall & surface Score: 0
  • Extracellular Score: 0.0006
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.010689
  • TAT(Tat/SPI): 0.000932
  • LIPO(Sec/SPII): 0.003493
• predicted transmembrane helices (TMHMM): 14

⊟Accession numbers

• GI: 446495217 NCBI
• RefSeq: WP_000573071 NCBI
• UniProt: see SACOL0952

⊟Protein sequence

• MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSSQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK

⊟Experimental data

• experimentally validated: see SACOL0952
• protein localization: see SACOL0952
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• data available for JSNZ

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications