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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS02840 [old locus tag: SACOL0555 ]
- pan locus tag?: SAUPAN002252000
- symbol: SACOL_RS02840
- pan gene symbol?: ftsH
- synonym:
- product: zinc metalloprotease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS02840 [old locus tag: SACOL0555 ]
- symbol: SACOL_RS02840
- product: zinc metalloprotease
- replicon: chromosome
- strand: +
- coordinates: 563719..565812
- length: 2094
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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2041ATGCAGAAAGCTTTTCGCAATGTGCTAGTTATCGTAATAATAGGCGTTATTATTTTTGGT
CTATTTTCATATTTAAACGGTAATGGAAATATGCCGAAACAGCTTACATATAATCAATTT
ACTGAGAAGTTGGAAAAAGGTGACCTTAAAACTTTAGAAATCCAACCACAACAAAATGTC
TATATGGTAAGTGGTAAAACGAAAAATGATGAAGACTATTCATCAACTATTTTATATAAC
AACGAAAAAGAATTACAAAAAATTACTGATGCTGCTAAAAAGCAAAACGGTGTAAAATTA
ACGATTAAAGAAGAAGAAAAACAAAGTGTCTTTGTGAGTATACTTTCAACATTAATTCCA
GTTGTAGTCATAGCGTTATTATTTATTTTCTTCCTAAGCCAAGCACAAGGTGGCGGTAGT
GGCGGTCGTATGATGAACTTTGGTAAATCTAAAGCAAAAATGTACGATAATAATAAACGT
CGTGTTCGTTTCTCTGATGTAGCAGGGGCAGATGAAGAAAAACAAGAATTAATTGAAATT
GTTGATTTCTTGAAAGATAATAAAAAATTCAAAGAAATGGGATCTAGGATTCCTAAAGGT
GTCTTACTTGTTGGACCTCCAGGTACTGGTAAAACATTACTTGCTAGAGCGGTTGCAGGT
GAAGCTGGCGCACCATTCTTCTCTATTAGTGGTTCAGACTTTGTAGAGATGTTTGTTGGT
GTTGGTGCGAGCCGTGTTCGTGACTTATTCGATAATGCTAAGAAAAACGCGCCTTGTATC
ATCTTTATCGATGAGATTGATGCTGTTGGTCGTCAACGTGGTGCAGGTGTTGGTGGCGGT
CATGATGAACGTGAACAAACCCTAAACCAATTATTAGTTGAAATGGATGGTTTCGGTGAA
AATGAAGGTATCATTATGATAGCTGCTACAAACCGTCCTGATATCCTTGACCCAGCCTTA
TTACGTCCAGGTCGTTTTGATAGACAAATTCAAGTTGGTCGTCCAGATGTGAAAGGCCGT
GAAGCAATTCTTCATGTTCATGCTAAAAACAAACCACTTGATGAAACGGTTGATTTAAAA
GCAATTTCACAACGTACACCTGGTTTCTCAGGTGCTGATTTAGAGAACTTATTAAATGAA
GCATCTTTAATTGCTGTACGTGAAGGTAAAAAGAAAATTGACATGAGAGATATCGAAGAG
GCAACGGATAGAGTTATAGCCGGACCTGCTAAGAAATCTCGAGTTATTTCTAAGAAAGAA
CGTAATATTGTTGCTCATCACGAAGCTGGTCATACAATTATCGGTATGGTACTTGATGAG
GCAGAAGTAGTGCATAAAGTTACTATTGTTCCACGTGGACAAGCAGGTGGTTATGCAATG
ATGCTACCTAAACAAGATCGTTTCTTAATGACTGAACAAGAGTTATTAGATAAAATCTGT
GGTTTACTTGGTGGACGTGTATCAGAAGATATTAACTTTAACGAAGTATCAACAGGTGCT
TCAAATGACTTCGAACGTGCAACACAAATCGCACGCTCAATGGTTACGCAATATGGTATG
AGTAAAAAATTAGGACCATTACAGTTCGGTCATAGCAATGGTCAAGTATTCTTAGGTAAA
GATATGCAAGGTGAGCCTAATTATTCAAGCCAAATCGCATATGAAATTGATAAAGAAGTT
CAACGAATCGTTAAAGAACAATACGAACGTTGTAAACAAATTTTATTAGAGCACAAAGAA
CAATTAATTTTAATTGCTGAAACATTATTAACAGAAGAAACATTAGTTGCTGAACAAATT
CAATCATTATTCTACGAAGGTAAATTACCTGAAATTGATTATGATGCAGCTAAAGTTGTT
AAAGATGAAGATTCTGAATTTAATGATGGTAAATTCGGTAAATCTTATGAAGAGATTCGT
AAAGAGCAATTAGAAGATGGACAACGTGACGAAAGTGAAGATCGTAAAGAAGAAAAAGAT
ATTGCTGAGGATAAAAAAGAAGCTGATAAATCTGATGAAAAAGATGAACCAGCACATCAA
CAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS02840 [old locus tag: SACOL0555 ]
- symbol: SACOL_RS02840
- description: zinc metalloprotease
- length: 697
- theoretical pI: 5.17894
- theoretical MW: 77783.9
- GRAVY: -0.508178
⊟Function[edit | edit source]
- reaction: EC 3.4.24.-? ExPASy
- ⊞TIGRFAM: Cellular processes Cell division ATP-dependent metallopeptidase HflB (TIGR01241; EC 3.4.24.-; HMM-score: 791.5)Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent metallopeptidase HflB (TIGR01241; EC 3.4.24.-; HMM-score: 791.5)and 19 more
- TheSEED: see SACOL0555
- ⊞PFAM: Peptidase_MA (CL0126) Peptidase_M41; Peptidase family M41 (PF01434; HMM-score: 249.1)and 24 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors: Zn2+
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MQKAFRNVLVIVIIGVIIFGLFSYLNGNGNMPKQLTYNQFTEKLEKGDLKTLEIQPQQNVYMVSGKTKNDEDYSSTILYNNEKELQKITDAAKKQNGVKLTIKEEEKQSVFVSILSTLIPVVVIALLFIFFLSQAQGGGSGGRMMNFGKSKAKMYDNNKRRVRFSDVAGADEEKQELIEIVDFLKDNKKFKEMGSRIPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPALLRPGRFDRQIQVGRPDVKGREAILHVHAKNKPLDETVDLKAISQRTPGFSGADLENLLNEASLIAVREGKKKIDMRDIEEATDRVIAGPAKKSRVISKKERNIVAHHEAGHTIIGMVLDEAEVVHKVTIVPRGQAGGYAMMLPKQDRFLMTEQELLDKICGLLGGRVSEDINFNEVSTGASNDFERATQIARSMVTQYGMSKKLGPLQFGHSNGQVFLGKDMQGEPNYSSQIAYEIDKEVQRIVKEQYERCKQILLEHKEQLILIAETLLTEETLVAEQIQSLFYEGKLPEIDYDAAKVVKDEDSEFNDGKFGKSYEEIRKEQLEDGQRDESEDRKEEKDIAEDKKEADKSDEKDEPAHQQAPNIEKPYDPNHPDNK
⊟Experimental data[edit | edit source]
- experimentally validated: see SACOL0555
- protein localization: see SACOL0555
- quantitative data / protein copy number per cell:
- ⊟interaction partners:
SACOL_RS03030 50S ribosomal protein L1 [1] (data from MRSA252) SACOL_RS03080 elongation factor Tu [1] (data from MRSA252) SACOL_RS04840 NADH dehydrogenase [1] (data from MRSA252) SACOL_RS05630 pyruvate dehydrogenase E1 component subunit alpha [1] (data from MRSA252) SACOL_RS05635 pyruvate dehydrogenase E1 component subunit beta [1] (data from MRSA252) SACOL_RS05640 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [1] (data from MRSA252) SACOL_RS05645 dihydrolipoyl dehydrogenase [1] (data from MRSA252) SACOL_RS06140 cell division protein FtsZ [1] (data from MRSA252) SACOL_RS07385 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [1] (data from MRSA252) SACOL_RS07390 2-oxoglutarate dehydrogenase E1 component [1] (data from MRSA252) SACOL_RS08345 molecular chaperone DnaK [1] (data from MRSA252) SACOL_RS08930 pyruvate kinase [1] (data from MRSA252) SACOL_RS08995 universal stress protein UspA [1] (data from MRSA252) SACOL_RS11695 30S ribosomal protein S5 [1] (data from MRSA252) SACOL_RS11750 30S ribosomal protein S3 [1] (data from MRSA252)
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Jump up to: 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
J Proteome Res: 2011, 10(3);1139-50
[PubMed:21166474] [WorldCat.org] [DOI] (I p)