From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS00840 [old locus tag: SACOL0165 ]
  • pan locus tag?: SAUPAN001019000
  • symbol: SACOL_RS00840
  • pan gene symbol?: —
  • synonym:
  • product: 4'-phosphopantetheinyl transferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS00840 [old locus tag: SACOL0165 ]
  • symbol: SACOL_RS00840
  • product: 4'-phosphopantetheinyl transferase
  • replicon: chromosome
  • strand: +
  • coordinates: 190146..190790
  • length: 645
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (190146..190790) NCBI
  • BioCyc: SACOL_RS00840 BioCyc
  • MicrobesOnline: see SACOL0165

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGACAGTATTTGTAATGCAATTACAGAGTAACTTGAAAAGTATTGAAGAATTAATATCA
    CAAAGTCGTTGGTCATATAAAAAACCGCGTACAGTCAACTATAGATACAATCAAGATAAA
    CTCATGCACAGATTGGGAGATATTTTAGTGCAATATGGAATTCAACATGACACAGGTTTA
    TTACCACATGAATGGCATTATCACATTTCGCCACGAGGTAAGGCAGATATTGTTCAACAC
    AATCGTGATGGACAGCCCATCTATGTGAGCTTATCATATAGTTATCCTTATATCGTGTGT
    GTTGTCGATAAAGAACCAGTTGGTATTGATATCGAAAAGATATCACAACGTTTAGACTGG
    CGTACGTTAGTGACGTGTTTCTCTACAAACGAAGCACATCAAATATGTAGTTTAAATGAT
    TTTTATCAAATATGGACACAAAAAGAAAGTTTTACAAAATTGATTGGTGAAGGTTTAATC
    AAAGGATTGGACATTTATGATATGACACAATCACACTTTTATCAATCACGTGAAGTGAAG
    TTCAAACAATTTATTTTTGATCAGTTTATGGTACAGGTATGTTTCTTAGGACAGGCACCC
    TGGGGTTATAAAAAAGTGTCTGTATTTCAGTTATTGAGTAGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    645

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS00840 [old locus tag: SACOL0165 ]
  • symbol: SACOL_RS00840
  • description: 4'-phosphopantetheinyl transferase
  • length: 214
  • theoretical pI: 8.29916
  • theoretical MW: 25261.8
  • GRAVY: -0.334579

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein modification and repair phosphopantetheine--protein transferase domain (TIGR00556; HMM-score: 23.9)
  • TheSEED: see SACOL0165
  • PFAM:
    4PPT (CL0670) ACPS; 4'-phosphopantetheinyl transferase superfamily (PF01648; HMM-score: 39.5)
    and 2 more
    no clan defined Pyrophosphatase; Inorganic pyrophosphatase (PF00719; HMM-score: 12.5)
    HTH (CL0123) HTH_33; Winged helix-turn helix (PF13592; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9759
    • Cytoplasmic Membrane Score: 0.0083
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0153
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007852
    • TAT(Tat/SPI): 0.000346
    • LIPO(Sec/SPII): 0.001008
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTVFVMQLQSNLKSIEELISQSRWSYKKPRTVNYRYNQDKLMHRLGDILVQYGIQHDTGLLPHEWHYHISPRGKADIVQHNRDGQPIYVSLSYSYPYIVCVVDKEPVGIDIEKISQRLDWRTLVTCFSTNEAHQICSLNDFYQIWTQKESFTKLIGEGLIKGLDIYDMTQSHFYQSREVKFKQFIFDQFMVQVCFLGQAPWGYKKVSVFQLLSS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: see SACOL0165
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for JSNZ

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS00840&oldid=90941"