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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2481 [new locus tag: SACOL_RS13000 ]
  • pan locus tag?: SAUPAN006033000
  • symbol: SACOL2481
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2481 [new locus tag: SACOL_RS13000 ]
  • symbol: SACOL2481
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2537620..2537985
  • length: 366
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTTAAAAGAAAAAGAAAGTTTTAGATTGCTATATCAAGCTATAAGAGAGATTGCAGAT
    AAAATTGGAGATAATCAGTTAGAAACTAATTCCGTTAGTTTATTATTATTGGACTTTGAT
    TTTGAACATGAAGTATTTGATGAATTGTATCTTGTGATTTTAAAATATTTAAATACAGTA
    AGTATAGAGAACATAAGTCATAGTGAGCTTTTGAATTTAATAGAAAATACGATTCCAGAA
    GATCGAGAGATTAACACGTTTGTAAAAAATAAAATAATAATTGGCTTTGCTAATAATTAC
    TTCCCTGAATTACAAGTATTAGCAAACGAAATAAAATCTGATATGGCTAGTTCATTAAAA
    CAATGA
    60
    120
    180
    240
    300
    360
    366


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2481 [new locus tag: SACOL_RS13000 ]
  • symbol: SACOL2481
  • description: hypothetical protein
  • length: 121
  • theoretical pI: 4.2617
  • theoretical MW: 14067
  • GRAVY: -0.0975207

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108624: hypothetical protein
  • PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.627
    • Cytoplasmic Membrane Score: 0.1379
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.2347
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002342
    • TAT(Tat/SPI): 0.000085
    • LIPO(Sec/SPII): 0.000202
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLKEKESFRLLYQAIREIADKIGDNQLETNSVSLLLLDFDFEHEVFDELYLVILKYLNTVSIENISHSELLNLIENTIPEDREINTFVKNKIIIGFANNYFPELQVLANEIKSDMASSLKQ

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: Cytoplasmic [1]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: SigB* (activation) regulon
    SigB*(sigma factor)controlling a large regulon involved in stress/starvation response and adaptation;  [2]   other strains

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)
  2. ↑ Markus Bischoff, Paul Dunman, Jan Kormanec, Daphne Macapagal, Ellen Murphy, William Mounts, Brigitte Berger-Bächi, Steven Projan
    Microarray-based analysis of the Staphylococcus aureus sigmaB regulon.
    J Bacteriol: 2004, 186(13);4085-99
    [PubMed:15205410] [WorldCat.org] [DOI] (P p)

⊟Relevant publications[edit | edit source]

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