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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL2030 [new locus tag: SACOL_RS10600 ]
- pan locus tag?: SAUPAN005285000
- symbol: scrR
- pan gene symbol?: scrR
- synonym:
- product: sucrose operon repressor
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL2030 [new locus tag: SACOL_RS10600 ]
- symbol: scrR
- product: sucrose operon repressor
- replicon: chromosome
- strand: -
- coordinates: 2088852..2089802
- length: 951
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237140 NCBI
- RefSeq: YP_186848 NCBI
- BioCyc: see SACOL_RS10600
- MicrobesOnline: 913504 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGAAAAATATATCTGATATTGCCAAATTGGCAGGCGTTTCAAAAAGTACAGTATCTAGA
TTTTTAAATAATGGATCTGTCAGTAAAAAAACAAGTGAAAAATTAACAAGAATTATAGCA
GAACATGACTATCAACCGAATCAATTTGCTCAAAGTTTAAGAGCGAGACAAACACACCTT
ATTGGTGCCATTATACCTAGAATGAATTCATATGCAGTAGATGAAACAATCAAAGGATTG
GCAAAACAATGCCAAAAATATGAATCACAATTAATTTTAAATTACACAGGTTTAAATATC
GAAGCAGAAATACAAGCGCTTGAAACATTAGCACGCAGTAAAGTAGATGGTATTGTTTTA
ATGGCTACAGACATAACAGAGAGACATATTGAAGTCATTAATAAAATGAATGTACCAATC
GTTATTGTTGGTCAACAACATGAACAACTTCATAGTATTGTGCATGATGATTATAAAGCA
GGTCAAATTATAGGCGAATGGATTGGTCAACAGGGATATCAACAAGTTGAAGTGTTTAGT
GTAAGTGAAAAAGATATTGCAGTTGGTATACATAGAAAACGTGGTTTACTTGACCAGTTA
GCTAAATACCAAATTAAACCTAATATACATGAAACAAATTTTACTTATGTGGAAGCACAA
AAAGATGTTGCAAATGTTTTGGAAAATGTGGAGCAAGTAGATGCGGTTGTTGGAGCAACT
GATACGATTGCATTAGCTGCCTATAAATATTATTCTGATAAAAAAGATGTTATGAAACCA
CATCAAATATATGGTTTTGGTGGTGACCCAATGACACAATTAGTGTCTCCATCGATAAAA
ACAATTCATTATAATTATTTTGAAGCTGGCCAATGCGCGATGGAAGAGATACAACAGATG
CTTAAAAAGCAAGATATGCCATATAGCGTCACAGTAGATGTTAATATTTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL2030 [new locus tag: SACOL_RS10600 ]
- symbol: ScrR
- description: sucrose operon repressor
- length: 316
- theoretical pI: 6.6818
- theoretical MW: 35499.3
- GRAVY: -0.297785
⊟Function[edit | edit source]
- ⊞TIGRFAM: Regulatory functions DNA interactions trehalose operon repressor (TIGR02405; HMM-score: 150.5)and 3 more
- TheSEED :
- Sucrose operon repressor ScrR, LacI family
- ⊞PFAM: Periplas_BP (CL0144) Peripla_BP_4; Periplasmic binding protein domain (PF13407; HMM-score: 66.9)HTH (CL0123) LacI; Bacterial regulatory proteins, lacI family (PF00356; HMM-score: 61)and 21 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effector: Sucrose-6-phosphate
- ⊞genes regulated by ScrR, TF important in Sucrose utilizationRegPrecise
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKNISDIAKLAGVSKSTVSRFLNNGSVSKKTSEKLTRIIAEHDYQPNQFAQSLRARQTHLIGAIIPRMNSYAVDETIKGLAKQCQKYESQLILNYTGLNIEAEIQALETLARSKVDGIVLMATDITERHIEVINKMNVPIVIVGQQHEQLHSIVHDDYKAGQIIGEWIGQQGYQQVEVFSVSEKDIAVGIHRKRGLLDQLAKYQIKPNIHETNFTYVEAQKDVANVLENVEQVDAVVGATDTIALAAYKYYSDKKDVMKPHQIYGFGGDPMTQLVSPSIKTIHYNYFEAGQCAMEEIQQMLKKQDMPYSVTVDVNI
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int J Med Microbiol: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p)