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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1372 [new locus tag: SACOL_RS06985 ]
- pan locus tag?: SAUPAN003711000
- symbol: SACOL1372
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1372 [new locus tag: SACOL_RS06985 ]
- symbol: SACOL1372
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1377411..1377515
- length: 105
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237704 NCBI
- RefSeq: YP_186225 NCBI
- BioCyc:
- MicrobesOnline: 912831 MicrobesOnline
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
61ATGAATGGTTTAAATTCTGTTATTGGCGCAATGATAATAATTGATAAAAACGCAACAACA
GTTACTATGAATTTTTTAATTTACATCACCTACTATAAATATTAA60
105
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1372 [new locus tag: SACOL_RS06985 ]
- symbol: SACOL1372
- description: hypothetical protein
- length: 34
- theoretical pI: 8.96457
- theoretical MW: 3890.61
- GRAVY: 0.594118
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7105
- Cytoplasmic Membrane Score: 0.0015
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.2879
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 0.83
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.188208
- TAT(Tat/SPI): 0.00104
- LIPO(Sec/SPII): 0.060479
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNGLNSVIGAMIIIDKNATTVTMNFLIYITYYKY
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]