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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1359 [new locus tag: SACOL_RS06920 ]
  • pan locus tag?: SAUPAN003697000
  • symbol: SACOL1359
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1359 [new locus tag: SACOL_RS06920 ]
  • symbol: SACOL1359
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1364976..1365566
  • length: 591
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    TTGAGAGTGAATGAAATGAATGCTAAAGAACAATTAGTGGACAATTTAATGAAAACATCA
    TCGCAATTATTTAAATTTCACGGTGAAGTTGCCATGCAGCTTTTCTTAAATGATGAATTA
    AAATTACCTTCTATTGTTGAAATATGCGTGGAACGTAAGCGTTTAAGTGATATTGTGAAA
    GTTATTCCGCAATCATATGCGTTACTATACATAGATAAGCAAGATCAAGCAATAGCTAAA
    GAAGATTTATCACTTTCAAAAATTGCAAAAGTTTATGTGCAATATGATGATACAACAATA
    ATGAGTATTTTCGTTTATGATGTAGTAAACGATGAATGGATTTTTAGATTGGATCCGAAT
    ATACGTATACCTAAGAGTAACATATACTTCCATAGTTTAAATTGGGATGTGGATTATATT
    AAACCGGAGATCGTTCTAATGTATGATCTAATGCAACACCATCAGTATCATCACTATTCC
    AATTATAAACGAGTCATAGATGCATTAAGCTACTATCAATTTTTTATTTTAAAATTTGTA
    GTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    591

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1359 [new locus tag: SACOL_RS06920 ]
  • symbol: SACOL1359
  • description: hypothetical protein
  • length: 196
  • theoretical pI: 6.51601
  • theoretical MW: 23380.9
  • GRAVY: -0.203571

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108031: hypothetical protein
  • PFAM:
    TPR (CL0020) CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat (PF16418; HMM-score: 13.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.3612
    • Cytoplasmic Membrane Score: 0.5248
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.1138
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002184
    • TAT(Tat/SPI): 0.000192
    • LIPO(Sec/SPII): 0.000391
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRVNEMNAKEQLVDNLMKTSSQLFKFHGEVAMQLFLNDELKLPSIVEICVERKRLSDIVKVIPQSYALLYIDKQDQAIAKEDLSLSKIAKVYVQYDDTTIMSIFVYDVVNDEWIFRLDPNIRIPKSNIYFHSLNWDVDYIKPEIVLMYDLMQHHQYHHYSNYKRVIDALSYYQFFILKFVVGEQRIKDAIQRTINN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: Cytoplasmic [1]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CcpA regulon
    CcpA(TF)important in Carbon catabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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