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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2170 [new locus tag: SA_RS12460 ]
  • pan locus tag?: SAUPAN005907000
  • symbol: SA2170
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2170 [new locus tag: SA_RS12460 ]
  • symbol: SA2170
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2439513..2439935
  • length: 423
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAGTAACTCACAAGCAATTCAAGCAATTGAAAACGTGTTAGCAACGTCAAAAGTTGGT
    GTATTATCAACTGCATATAATAACAAACCTAATAGTAGATATATGGTCTTTTATAATGAT
    GGTCTTACTTTATATACTAAAACGAATATCCATTCTGCTAAGGTCAAAGAAATTAAAGAT
    AATCCAGCAGCATATGTTTTGTTAGGCTATAACGACACAACTAATCGTAGTTTCGTTGAA
    ATGGAAGCCACGATAGAAGTAGTTACTGATCAAAAAGTAATCGATTGGTTATGGGAGACT
    CAAGATAAAAGCTTTTTCAGTTCAAAAGAAGACCCAGAACTTTGTGTTTTAAAGGTGACA
    CCACAATCTGTTAAATTGATGAATGACAAATCATTAGATACACCTATCAAAATCGATTTA
    TAA
    60
    120
    180
    240
    300
    360
    420
    423


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2170 [new locus tag: SA_RS12460 ]
  • symbol: SA2170
  • description: hypothetical protein
  • length: 140
  • theoretical pI: 4.90619
  • theoretical MW: 15816.9
  • GRAVY: -0.334286

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function Enzymes of unknown specificity PPOX class probable F420-dependent enzyme (TIGR03618; HMM-score: 27.5)
    and 3 more
    Unknown function Enzymes of unknown specificity PPOX class probable F420-dependent enzyme, Rv3369 family (TIGR03667; EC 1.-.-.-; HMM-score: 19.9)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridoxine pyridoxamine 5'-phosphate oxidase (TIGR00558; EC 1.4.3.5; HMM-score: 18.2)
    Unknown function Enzymes of unknown specificity PPOX class probable FMN-dependent enzyme, alr4036 family (TIGR04026; EC 1.-.-.-; HMM-score: 15.7)
  • TheSEED  :
    • Pyridoxamine 5'-phosphate oxidase like general stress protein
  • PFAM:
    FMN-binding (CL0336) PNPOx_N; Pyridoxamine 5'-phosphate oxidase (PF01243; HMM-score: 61.7)
    Pyrid_ox_like; Pyridoxamine 5'-phosphate oxidase like (PF16242; HMM-score: 50.9)
    and 2 more
    Pyridox_ox_2; Pyridoxamine 5'-phosphate oxidase (PF12900; HMM-score: 18.9)
    SH3 (CL0010) Tudor_5; Histone methyltransferase Tudor domain 1 (PF18359; HMM-score: 14.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9838
    • Cytoplasmic Membrane Score: 0.0013
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0148
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.022377
    • TAT(Tat/SPI): 0.002178
    • LIPO(Sec/SPII): 0.01634
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNSQAIQAIENVLATSKVGVLSTAYNNKPNSRYMVFYNDGLTLYTKTNIHSAKVKEIKDNPAAYVLLGYNDTTNRSFVEMEATIEVVTDQKVIDWLWETQDKSFFSSKEDPELCVLKVTPQSVKLMNDKSLDTPIKIDL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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