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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1978 [new locus tag: SA_RS11395 ]
  • pan locus tag?: SAUPAN005566000
  • symbol: SA1978
  • pan gene symbol?: htsB
  • synonym:
  • product: ferrichrome ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1978 [new locus tag: SA_RS11395 ]
  • symbol: SA1978
  • product: ferrichrome ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 2246925..2247956
  • length: 1032
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGCTATAAAAGAAATAAGTAGCCAATCTGCCATAGATCATAAAAGAAAAAGACGCACA
    ACACTCACGTATATAGTGAGTTTGTGCTTTCTTTTTATTTGTATATATTTAAATATGGCG
    ATTGGTTCTTCGAAAATTAATTTTAGCGATATCATTCACTATGTTACTGGTCATACAGAT
    ACGAAAGCAACGTTTTTATTGCATAATGTACGTATGCCAAGGATGATTGCAGGGTTATTT
    ATTGGCGGTGCATTAGCGGTATCTGGTTTGTTAATGCAAGCAATGACACGCAATCCGCTA
    GCATCACCTAAAATTTTTGGTGTCAGTTCTGGTGCATCGTTTTTCATTGTATTTGTGACG
    ATTATCATTCCATCATTAGAATATTATGCATTATATTTAGGTGTGATAGGTGCATTTATA
    GGTGGTTTAACTGTTTATACACTTTCAGGTGCTACGAAAGGTATGACACCCATTAAATTA
    GCATTGGCTGGTATGGCCATCCATTTGTTTTTTAGTAGTATGACTGAAGGTATTATTATT
    TTGAATGAGAATTCAAACGAACAAGTGATGTTTTGGCTTGTCGGTTCATTATCCAGTATG
    AAGTGGGATGAAATTTTAACCATTTTACCATGGATTATTGGTGCTTTAATTGTAACGATT
    TTTATTGGACGTCAACTAACGATTATGGAACTAGGCGATGACATTGCTAAGGGATTGGGT
    CAAAATATAAATAAAGTTAGAATTATCATTGGGCTATTAGTCATTATTCTTACAGGTATG
    TCGGTGTCAGTGGCAGGACCAATTGGATTTGTTGGCTTAATCGTACCGCATATAGTCAAA
    CGCTATGTGAGTAAGAATTATTTAGTCATGATTCCATTAACATTTATTATAGGTGCAGAT
    TTGTTACTACTATCAGATGTATTAAGTCGTTTAATCACTTATCCTTACGAATCACCTGTA
    GGTATTGTGACATCATTCGTAGGTGCACTTTACTTCTTATTTATAACGATTAAAGGGGTG
    AAAAGAATATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1032

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1978 [new locus tag: SA_RS11395 ]
  • symbol: SA1978
  • description: ferrichrome ABC transporter permease
  • length: 343
  • theoretical pI: 9.97316
  • theoretical MW: 37465.8
  • GRAVY: 0.861224

⊟Function[edit | edit source]

  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 179.7)
  • TheSEED  :
    • Ferric-staphyloferrin A ABC transporter, permease protein 1
    Iron acquisition and metabolism Iron acquisition and metabolism - no subcategory Heme, hemin uptake and utilization systems in GramPositives  Heme ABC type transporter HtsABC, permease protein HtsB
  • PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 329.6)
    and 3 more
    ABC-3; ABC 3 transport family (PF00950; HMM-score: 20.9)
    no clan defined TM_helix; Conserved TM helix (PF05552; HMM-score: 14.9)
    Transgly_assoc; Transglycosylase associated protein (PF04226; HMM-score: 8.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.110008
    • TAT(Tat/SPI): 0.001918
    • LIPO(Sec/SPII): 0.01876
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAIKEISSQSAIDHKRKRRTTLTYIVSLCFLFICIYLNMAIGSSKINFSDIIHYVTGHTDTKATFLLHNVRMPRMIAGLFIGGALAVSGLLMQAMTRNPLASPKIFGVSSGASFFIVFVTIIIPSLEYYALYLGVIGAFIGGLTVYTLSGATKGMTPIKLALAGMAIHLFFSSMTEGIIILNENSNEQVMFWLVGSLSSMKWDEILTILPWIIGALIVTIFIGRQLTIMELGDDIAKGLGQNINKVRIIIGLLVIILTGMSVSVAGPIGFVGLIVPHIVKRYVSKNYLVMIPLTFIIGADLLLLSDVLSRLITYPYESPVGIVTSFVGALYFLFITIKGVKRI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Fur* (repression) regulon
    Fur*(TF)important in Iron homeostasis; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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