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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1388 [new locus tag: SA_RS07850 ]
- pan locus tag?: SAUPAN004140000
- symbol: SA1388
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1388 [new locus tag: SA_RS07850 ]
- symbol: SA1388
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1593470..1594570
- length: 1101
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1124229 NCBI
- RefSeq: NP_374672 NCBI
- BioCyc: see SA_RS07850
- MicrobesOnline: 103698 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1081ATGAAAATAGCTGATTTAATGACATTGTTAGATCATCATGTGCCATTTAGTACTGCTGAA
TCTTGGGATAATGTAGGATTGTTAATAGGTGATGGAGATGTTGAAGTTACTGGTGTTTTA
ACAGCATTAGACTGTACGTTGGAAGTAGTAAATGAAGCAATCGAAAAAGGTTATAATACT
ATTATTAGTCATCATCCTCTAATCTTTAAAGGCGTAACATCATTAAAAGCTAATGGTTAT
GGTTTGATCATTAGAAAACTAATTCAACATGACATTAATTTAATAGCGATGCATACAAAT
TTAGATGTAAATCCGTATGGTGTCAATATGATGTTGGCGAAGGCGATGGGTTTGAAGAAC
ATTTCAATAATAAATAATCAACAAGATGTATACTATAAAGTTCAAACATATATACCTAAG
GATAATGTTGGACCATTTAAAGATAAGCTTAGTGAAAATGGATTAGCGCAAGAAGGTAAT
TATGAATATTGTTTCTTTGAAAGTGAAGGAAGAGGGCAATTCAAACCAGTTGGTGAAGCT
AATCCAACAATAGGACAAATTGATAAAATTGAAGATGTAGATGAAGTTAAAATTGAATTT
ATGATAGATGCATATCAAAAGTCAAGGGCTGAGCAATTAATTAAACAATACCATCCATAT
GAAACACCGGTATTTGATTTTATTGAGATAAAACAAACATCCCTTTATGGACTTGGCGTT
ATGGCAGAAGTGGATAATCAAATGACATTGGAAGATTTCGCAGCTGATATTAAATCTAAA
TTAAATATCCCAAGTGTCCGTTTTGTTGGTGAGTCTAATCAGAAAATTAAACGTATTGCA
ATTATTGGTGGTTCAGGTATTGGATATGAATATCAAGCTGTCCAACAAGGCGCAGATGTC
TTTGTTACAGGTGATATTAAACATCATGATGCCTTAGATGCTAAAATTCATGGTGTGAAT
TTAATTGATATTAATCATTACAGCGAATATGTGATGAAAGAAGGTTTAAAAACGTTACTA
ATGAATTGGTTCAATATAGAAAAAATAAATATAGATGTTGAAGCATCTACAATTAATACA
GATCCATTTCAATATATTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1388 [new locus tag: SA_RS07850 ]
- symbol: SA1388
- description: hypothetical protein
- length: 366
- theoretical pI: 4.66964
- theoretical MW: 41074.6
- GRAVY: -0.162568
⊟Function[edit | edit source]
- TIGRFAM: Unknown function General dinuclear metal center protein, YbgI/SA1388 family (TIGR00486; HMM-score: 234)
- TheSEED :
- Bsu YqfO NIF3/CutA domain
- Nif3-like dinuclear metal center hexameric protein
- ⊞PFAM: no clan defined DUF34_NIF3; Duf34/NIF3 (NGG1p interacting factor 3) (PF01784; HMM-score: 265.9)and 1 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKIADLMTLLDHHVPFSTAESWDNVGLLIGDGDVEVTGVLTALDCTLEVVNEAIEKGYNTIISHHPLIFKGVTSLKANGYGLIIRKLIQHDINLIAMHTNLDVNPYGVNMMLAKAMGLKNISIINNQQDVYYKVQTYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKIEDVDEVKIEFMIDAYQKSRAEQLIKQYHPYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGSGIGYEYQAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHYSEYVMKEGLKTLLMNWFNIEKINIDVEASTINTDPFQYI
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Kumar Singh Saikatendu, Xuejun Zhang, Lisa Kinch, Matthew Leybourne, Nick V Grishin, Hong Zhang
Structure of a conserved hypothetical protein SA1388 from S. aureus reveals a capped hexameric toroid with two PII domain lids and a dinuclear metal center.
BMC Struct Biol: 2006, 6;27
[PubMed:17187687] [WorldCat.org] [DOI] (I e)