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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0689 [new locus tag: SA_RS03930 ]
  • pan locus tag?: SAUPAN002638000
  • symbol: SA0689
  • pan gene symbol?: sstB
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0689 [new locus tag: SA_RS03930 ]
  • symbol: SA0689
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 787998..788954
  • length: 957
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCGCAACAATAATAAAAAAATAATGCTTTTAATTGCAGTAACGTTATTAATTAGTATG
    CTGTACTTATTTGTAGGTATTGATTTTGAAATATTTGAATATCAATTTTCAAGTCGTTTA
    AGAAAGTTCATATTAATTATTTTAGTAGGTGCTGCCATTGCAACTTCAGTGGTGATTTTT
    CAAGCGATTACAAATAACCGTCTATTGACACCATCAATAATGGGGTTAGATGCAGTTTAT
    TTATTTATCAAAGTATTGCCAGTCTTTTTATTTGGAATTCAATCGGTATGGGTTACTAAT
    GTATATTTGAACTTTATATTAACACTTATAACGATGGTGTTATTCGCACTAATCCTATTC
    CAAGGTATCTTTAAAATTGGACATTTTTCAATTTATTTTATCTTACTTATTGGTGTCCTT
    TTAGGAACATTTTTTAGAAGCATAACAGGTTTTATTCAACTGATTATGGATCCTGAGTCA
    TTTTTAGCAATACAAAGTAGTATGTTTGCTAATTTTAATGCTTCTAATTCGAATTTAGTT
    ACTTTCTCAGCAGTGCTATTAGTAATCTTATTAGTCATTACAATTTTACTATTGCCTTAT
    TTAGATGTATTGCTTTTAGGTCGTGCTGAAGCAATTAATCTTGGGATATCGTATGAAAAA
    TTAACGCGAATTCTACTTGTAATAGTCTCAGTTTTAGTTTCTGTGTCAACTGCATTAGTA
    GGACCAATTACATTTTTAGGTTTATTAACTGTAAATCTAGCGCATGAACTAATGAAGACG
    TATGAACATAAGTATATTTTAATTGCGACAATTTGCTTGAGTTGGATTAGTTTATTTAGT
    GCGCAATGGGTAGTTGAAAATGTGTTTGAAGCTACGACAGAAATGAGTATACTTATTGAT
    TTGATTGGTGGAAGTTATTTCATTTATCTATTAGTTAGAAGGAGAAATGCGCAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    957

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0689 [new locus tag: SA_RS03930 ]
  • symbol: SA0689
  • description: hypothetical protein
  • length: 318
  • theoretical pI: 9.18406
  • theoretical MW: 35777
  • GRAVY: 1.17138

⊟Function[edit | edit source]

  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 45.3)
  • TheSEED  :
    • Iron compound ABC uptake transporter permease protein
    Iron acquisition and metabolism Iron acquisition and metabolism - no subcategory Heme, hemin uptake and utilization systems in GramPositives  Iron compound ABC uptake transporter permease protein
    and 1 more
    Iron acquisition and metabolism Iron acquisition and metabolism - no subcategory Iron acquisition in Streptococcus  Iron compound ABC uptake transporter permease protein
  • PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 174.2)
    and 1 more
    no clan defined TMEM141; TMEM141 protein family (PF15110; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 0
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008382
    • TAT(Tat/SPI): 0.001361
    • LIPO(Sec/SPII): 0.005901
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Fur* (repression) regulon
    Fur*(TF)important in Iron homeostasis; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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