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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0556 [new locus tag: SA_RS03215 ]
  • pan locus tag?: SAUPAN002452000
  • symbol: SA0556
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0556 [new locus tag: SA_RS03215 ]
  • symbol: SA0556
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 649530..650162
  • length: 633
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    TTGGTTTGCGAGGTAATAGCTATATACAAAAATCCCAAATATAGAATTATTAAATATAAT
    GATGAATATTTGATGGTGAATATAATAAATAATTGGTTAGTTTTATTCATTCCATTGCTT
    AATTGGTTGACACCAAAAAGATACATCAAGATCAGTCAAGAAGAATTAGAAAGTTTAAAT
    ACTTTCAAACCTGCTAAAAACAATGCATTTTGGCCAGCATTAGGTAGTTCAGTTTTATTT
    AGTGTGACTTTTAGAAAGTATATGCCTTTATTTAATGTTAGATTGGAAAAAACAATAGTA
    ATAGCCATATTTTTTGTTGTATTTCTTGGTATTTTATTTTTCTACCTAAATTTAAATCGT
    AGGCTAGCATTAAGTGTTTTTACTATGAATAAAGAAAAAAGTCAGAAAATGATATTACTA
    CCTAATTTAAAACATTTTTTCTTTATAATATTTGCATATTTATATTTCGGTGGTTTTTCA
    TTTTTCACTTTATATGCCCTGATAACTATAGATGTTCAAAATATAATTATATTTATCTGT
    TGGGGTGCAGTAACTATGTTTTTCTTTTTTATAAACATTGTTCCCATTGGCATTAAAAAA
    GCTCATGTAATACTTCTTAAAAAAGCTGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    633


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0556 [new locus tag: SA_RS03215 ]
  • symbol: SA0556
  • description: hypothetical protein
  • length: 210
  • theoretical pI: 10.2841
  • theoretical MW: 24821.8
  • GRAVY: 0.688095

⊟Function[edit | edit source]

  • TIGRFAM:
    tandem five-TM protein (TIGR01218; HMM-score: 175.8)
    and 1 more
    Cellular processes Cellular processes DNA transformation Bacteroides conjugative transposon TraM protein (TIGR03779; HMM-score: 6.9)
  • TheSEED  :
    • repetitive hypothetical protein, fig|282458.1.peg.574 homolog
  • PFAM:
    no clan defined DUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 188.9)
    and 2 more
    CcmD_alt; CcmD family protein (PF20077; HMM-score: 14.8)
    DUF4519; Domain of unknown function (DUF4519) (PF15012; HMM-score: 14.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0003
    • Cytoplasmic Membrane Score: 0.9861
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0136
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007097
    • TAT(Tat/SPI): 0.00014
    • LIPO(Sec/SPII): 0.000686
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVCEVIAIYKNPKYRIIKYNDEYLMVNIINNWLVLFIPLLNWLTPKRYIKISQEELESLNTFKPAKNNAFWPALGSSVLFSVTFRKYMPLFNVRLEKTIVIAIFFVVFLGILFFYLNLNRRLALSVFTMNKEKSQKMILLPNLKHFFFIIFAYLYFGGFSFFTLYALITIDVQNIIIFICWGAVTMFFFFINIVPIGIKKAHVILLKKAE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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