PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA0171 [new locus tag: SA_RS01030 ]
• pan locus tag^?: SAUPAN001016000
• symbol: fdh
• pan gene symbol^?: fdh
• synonym:
• product: formate dehydrogenase

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA0171 [new locus tag: SA_RS01030 ]
• symbol: fdh
• product: formate dehydrogenase
• replicon: chromosome
• strand: +
• coordinates: 193987..195111
• length: 1125
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1122947 NCBI
• RefSeq: NP_373414 NCBI
• BioCyc: see SA_RS01030
• MicrobesOnline: 102440 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  ATGTCAAACGGTGCCGTTTTTTTTGTCATATTTTTAAAACAAGCAACATGCAACACGTAC
  TTTAAGGAAGTCAAAATTTATCATTTAGGAGAGATGGATATGAAAATCGTAGCATTATTT
  CCAGAAGCAGTAGAAGGTCAAGAAAATCAATTACTTAATACTAAAAAAGCAATAGGATTA
  AAAACATTTTTAGAGGAAAGAGGACATGAGTTCATTATATTAGCAGATAATGGTGAAGAC
  TTAGATAAACATTTACCAGATATGGATGTGATTATTAGTGCGCCATTTTATCCTGCATAT
  ATGACTCGTGAACGTATTGAAAAAGCACCGAACTTGAAATTAGCAATTACAGCAGGTGTA
  GGATCTGACCATGTAGATTTAGCGGCAGCAAGTGAACACAATATTGGTGTCGTTGAAGTT
  ACAGGAAGTAATACAGTTAGTGTGGCAGAACATGCGGTTATGGATTTATTAATACTTCTT
  AGAAACTATGAAGAAGGTCATCGTCAATCAGTAGAAGGTGAATGGAACTTGTCTCAAGTA
  GGTAATCATGCGCATGAATTACAACACAAAACAATTGGTATTTTTGGATTTGGTCGAATT
  GGACAACTTGTTGCTGAAAGATTAGCGCCATTTAATGTAACATTACAACACTATGATCCA
  ATCAATCAACAAGACCATAAATTGTCTAAATTTGTAAGCTTTGATGAACTTGTTTCATCA
  AGTGATGCGATTACAATTCATGCACCATTAACACCAGAAACTGATAACTTATTTGATAAA
  GATGTTTTAAGTCGTATGAAAAAACACAGTTATTTAGTGAATACTGCACGTGGTAAAATT
  GTAAATCGCGATGCGTTAGTTGAAGCGTTAGCATCCGAGCATTTACAAGGATATGCTGGT
  GATGTTTGGTATCCACAACCTGCACCTGCTGATCATCCATGGAGAACAATGCCTAGAAAT
  GCTATGACGGTTCACTATTCAGGTATGACTTTAGAAGCACAAAAACGCATTGAAGATGGA
  GTTAAAGATATTTTAGAGCGTTTCTTCAATCATGAACCTTTCCAAGATAAAGATATTATT
  GTTGCAAGTGGTCGTATTGCTAGTAAAAGTTATACAGCTAAATAG
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  1125
  

⊟Protein

⊟General

• locus tag: SA0171 [new locus tag: SA_RS01030 ]
• symbol: Fdh
• description: formate dehydrogenase
• length: 374
• theoretical pI: 6.02273
• theoretical MW: 41931.3
• GRAVY: -0.269251

⊟Function

• reaction:
  EC 1.2.2.1?  ExPASy
  Formate dehydrogenase (cytochrome) Formate + 2 ferricytochrome b1 = CO₂ + 2 ferrocytochrome b1 + 2 H⁺
• TIGRFAM:
  Metabolism Amino acid biosynthesis Serine family phosphoglycerate dehydrogenase (TIGR01327; EC 1.1.1.95; HMM-score: 203.6)
  and 2 more
  Metabolism Energy metabolism Glycolysis/gluconeogenesis glyceraldehyde-3-phosphate dehydrogenase, type I (TIGR01534; EC 1.2.1.-; HMM-score: 12.6)
  Metabolism Energy metabolism Sugars inositol 2-dehydrogenase (TIGR04380; EC 1.1.1.18; HMM-score: 12.6)
• TheSEED  :
  • NAD-dependent formate dehydrogenase (EC 1.17.1.9)
  Respiration Respiration - no subcategory Formate hydrogenase  NAD-dependent formate dehydrogenase (EC 1.2.1.2)
• PFAM:
  NADP_Rossmann (CL0063) 2-Hacid_dh_C; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (PF02826; HMM-score: 180.4)
  and 5 more
  Form_Glyc_dh (CL0325) 2-Hacid_dh; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (PF00389; HMM-score: 73.3)
  NADP_Rossmann (CL0063) Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (PF00044; HMM-score: 15.7)
  NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase (PF03446; HMM-score: 14.5)
  Shikimate_DH; Shikimate / quinate 5-dehydrogenase (PF01488; HMM-score: 13.8)
  IlvN; Acetohydroxy acid isomeroreductase, NADPH-binding domain (PF07991; HMM-score: 13.4)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 9.97
  • Cytoplasmic Membrane Score: 0
  • Cellwall Score: 0.01
  • Extracellular Score: 0.02
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 0.83
  • Signal peptide possibility: -0.5
  • N-terminally Anchored Score: -1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.015292
  • TAT(Tat/SPI): 0.000537
  • LIPO(Sec/SPII): 0.176867
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15925881 NCBI
• RefSeq: NP_373414 NCBI
• UniProt: A0A0H3JKG2 UniProt

⊟Protein sequence

• MSNGAVFFVIFLKQATCNTYFKEVKIYHLGEMDMKIVALFPEAVEGQENQLLNTKKAIGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSSSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell: data available for COL
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: no polycistronic organisation predicted

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: data available for COL

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications