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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS14615 [old locus tag: NWMN_2544 ]
  • pan locus tag?: SAUPAN006378000
  • symbol: NWMN_RS14615
  • pan gene symbol?: —
  • synonym:
  • product: cysteine hydrolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS14615 [old locus tag: NWMN_2544 ]
  • symbol: NWMN_RS14615
  • product: cysteine hydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2803988..2804548
  • length: 561
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2803988..2804548) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2544

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGTCTCGAAAAACGGCGCTATTAGTTTTGGATATGCAAGAAGGTATAGCGAGTAGTGTA
    CCTAGAATAAAAAATATTATTAAAGCGAATCAGAGAGCAATTGAAGCAGCAAGACAACAT
    CGAATACCAGTCATTTTCATACGTTTAGTGTTAGATAAGCATTTTAATGATGTCTCCTCG
    AGTAATAAAGTGTTTTCAACAATTAAAGCTCAAGGATATGCGATTACTGAAGCAGATGCA
    TCTACACGAATACTTGAAGATTTAGCACCACTAGAAGATGAGCCGATTATTTCTAAGCGA
    CGCTTTAGCGCATTTACAGGTAGTTACTTGGAAGTTTATTTACGTGCAAATGATATTAAT
    CATTTAGTATTAACGGGTGTCTCTACAAGTGGAGCTGTATTGAGCACGGCATTAGAAAGT
    GTAGATAAAGACTATTATATTACTGTTTTAGAAGATGCTGTTGGTGATAGATCAGATGAT
    AAACATGACTTTATTATTGAACAAATTTTATCACGCTCATGTGACATTGAATCCGTAGAG
    TCATGGAAAAGTAGTTTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    561

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS14615 [old locus tag: NWMN_2544 ]
  • symbol: NWMN_RS14615
  • description: cysteine hydrolase
  • length: 186
  • theoretical pI: 5.32022
  • theoretical MW: 20729.4
  • GRAVY: -0.0973118

⊟Function[edit | edit source]

  • TIGRFAM:
    pyrimidine utilization protein B (TIGR03614; HMM-score: 50.7)
  • TheSEED: see NWMN_2544
  • PFAM:
    no clan defined Isochorismatase; Isochorismatase domain (PF00857; HMM-score: 132.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9684
    • Cytoplasmic Membrane Score: 0.0071
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0243
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007284
    • TAT(Tat/SPI): 0.001377
    • LIPO(Sec/SPII): 0.00144
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSRKTALLVLDMQEGIASSVPRIKNIIKANQRAIEAARQHRIPVIFIRLVLDKHFNDVSSSNKVFSTIKAQGYAITEADASTRILEDLAPLEDEPIISKRRFSAFTGSYLEVYLRANDINHLVLTGVSTSGAVLSTALESVDKDYYITVLEDAVGDRSDDKHDFIIEQILSRSCDIESVESWKSSL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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